6QGY
Crystal structure of E.coli BamA beta-barrel in complex with nanobody B12
External Resource: Annotation
- Domain Annotation: SCOP/SCOPe Classification
- Domain Annotation: SCOP2 Classification
- Domain Annotation: ECOD Classification
- Domain Annotation: CATH
- SAbDab Antibody Annotation
- Protein Family Annotation
- Gene Ontology: Gene Product Annotation
- InterPro: Protein Family Classification
- Membrane Protein Annotation: OPM
- Membrane Protein Annotation: PDBTM
- Membrane Protein Annotation: mpstruc
Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage
Chains | Domain Info | Class | Fold | Superfamily | Family | Domain | Species | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
B | d6qgyb_ | All beta proteins | Immunoglobulin-like beta-sandwich | Immunoglobulin | V set domains (antibody variable domain-like) | automated matches | (Lama glama ) [TaxId: 9844 ], | SCOPe (2.08) |
D | d6qgyd_ | All beta proteins | Immunoglobulin-like beta-sandwich | Immunoglobulin | V set domains (antibody variable domain-like) | automated matches | (Lama glama ) [TaxId: 9844 ], | SCOPe (2.08) |
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
A | SCOP2B Superfamily | Porins | 8052233 | 3000224 | SCOP2B (2022-06-29) |
C | SCOP2 Family | Outer-membrane protein Omp85-like | 8098379 | 4006144 | SCOP2 (2022-06-29) |
C | SCOP2 Superfamily | Porins | 8098380 | 3000224 | SCOP2 (2022-06-29) |
C | SCOP2B Superfamily | Porins | 8052233 | 3000224 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | Bac_surface_Ag | e6qgyA1 | A: beta barrels | X: Outer membrane meander beta-barrels | H: Porins | T: Porin | F: Bac_surface_Ag | ECOD (1.6) |
C | Bac_surface_Ag | e6qgyC1 | A: beta barrels | X: Outer membrane meander beta-barrels | H: Porins | T: Porin | F: Bac_surface_Ag | ECOD (1.6) |
B | V-set_12 | e6qgyB1 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: V-set_12 | ECOD (1.6) |
D | V-set_12 | e6qgyD1 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: V-set_12 | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
---|---|---|---|---|---|---|
A | 2.40.160.50 | Mainly Beta | Beta Barrel | Porin | membrane protein fhac: a member of the omp85/tpsb transporter family | CATH (utative) |
C | 2.40.160.50 | Mainly Beta | Beta Barrel | Porin | membrane protein fhac: a member of the omp85/tpsb transporter family | CATH (utative) |
SAbDab Antibody Annotation SAbDab Database Homepage
Chain | Chain Class | Chain Subclass | Chain Type | Antigen Name(s) | Provenance Source |
---|---|---|---|---|---|
Heavy Chain | IGHV1 | - | outer membrane protein assembly factor bama | SAbDab (2024-08-16) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF01103 | Omp85 superfamily domain (Omp85) | Omp85 superfamily domain | The Omp85 protein superfamily contains bacterial outer membrane proteins, which can function as protein translocases or as membrane protein assembly factors [1]. The family includes the membrane bound beta barrel of proteins such as BamA and TamA fro ... | Domain | |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
IPR039910 | Surface antigen D15-like | Family | |
IPR034746 | POTRA domain | Domain | |
IPR000184 | Bacterial surface antigen (D15) | Domain | |
IPR010827 | POTRA domain, BamA/TamA-like | Domain | |
IPR023707 | Outer membrane protein assembly factor BamA | Family |
Membrane Protein Annotation: OPM OPM Database Homepage
Chains | External Link | Type | Class | Superfamily | Family |
---|---|---|---|---|---|
OPM | Transmembrane | Beta-barrel transmembrane | Omp85-TpsB transporters (n=16,S=20,22) | OMP insertion (Bam complex) porin (n=16,S=22) |
Membrane Protein Annotation: PDBTM PDBTM Database Homepage
Chains | External Link | Comment |
---|---|---|
PDBTM | Annotated as membrane protein by PDBTM |
Membrane Protein Annotation: mpstruc mpstruc Database Homepage
Chains | Resource Link | Group | Subgroup | Protein |
---|---|---|---|---|
mpstruc | TRANSMEMBRANE PROTEINS: BETA-BARREL | Omp85-TpsB Outer Membrane Transporter Superfamily | BamA in complex with nanobody E6 |