Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
AIF-2B_N_1e6qg6A2 A: alpha bundlesX: Translation initiation factor eIF-2B delta subunit N-terminal helical domain (From Topology)H: Translation initiation factor eIF-2B delta subunit N-terminal helical domain (From Topology)T: Translation initiation factor eIF-2B delta subunit N-terminal helical domainF: IF-2B_N_1ECOD (1.6)
AIF-2B_Ce6qg6A1 A: a/b three-layered sandwichesX: Rossmann-likeH: Rossmann-relatedT: NagB/RpiA/CoA transferase-likeF: IF-2B_CECOD (1.6)
BIF-2B_N_1e6qg6B2 A: alpha bundlesX: Translation initiation factor eIF-2B delta subunit N-terminal helical domain (From Topology)H: Translation initiation factor eIF-2B delta subunit N-terminal helical domain (From Topology)T: Translation initiation factor eIF-2B delta subunit N-terminal helical domainF: IF-2B_N_1ECOD (1.6)
BIF-2B_Ce6qg6B1 A: a/b three-layered sandwichesX: Rossmann-likeH: Rossmann-relatedT: NagB/RpiA/CoA transferase-likeF: IF-2B_CECOD (1.6)
CKOG1465e6qg6C2 A: alpha bundlesX: Translation initiation factor eIF-2B delta subunit N-terminal helical domain (From Topology)H: Translation initiation factor eIF-2B delta subunit N-terminal helical domain (From Topology)T: Translation initiation factor eIF-2B delta subunit N-terminal helical domainF: KOG1465ECOD (1.6)
CIF-2B_Ce6qg6C1 A: a/b three-layered sandwichesX: Rossmann-likeH: Rossmann-relatedT: NagB/RpiA/CoA transferase-likeF: IF-2B_CECOD (1.6)
DKOG1465e6qg6D2 A: alpha bundlesX: Translation initiation factor eIF-2B delta subunit N-terminal helical domain (From Topology)H: Translation initiation factor eIF-2B delta subunit N-terminal helical domain (From Topology)T: Translation initiation factor eIF-2B delta subunit N-terminal helical domainF: KOG1465ECOD (1.6)
DIF-2B_Ce6qg6D1 A: a/b three-layered sandwichesX: Rossmann-likeH: Rossmann-relatedT: NagB/RpiA/CoA transferase-likeF: IF-2B_CECOD (1.6)
ENTP_transferasee6qg6E1 A: a/b three-layered sandwichesX: Nucleotide-diphospho-sugar transferases (From Topology)H: Nucleotide-diphospho-sugar transferases (From Topology)T: Nucleotide-diphospho-sugar transferasesF: NTP_transferaseECOD (1.6)
FNTP_transferasee6qg6F1 A: a/b three-layered sandwichesX: Nucleotide-diphospho-sugar transferases (From Topology)H: Nucleotide-diphospho-sugar transferases (From Topology)T: Nucleotide-diphospho-sugar transferasesF: NTP_transferaseECOD (1.6)
GIF-2B_N_1e6qg6G2 A: alpha bundlesX: Translation initiation factor eIF-2B delta subunit N-terminal helical domain (From Topology)H: Translation initiation factor eIF-2B delta subunit N-terminal helical domain (From Topology)T: Translation initiation factor eIF-2B delta subunit N-terminal helical domainF: IF-2B_N_1ECOD (1.6)
GIF-2B_Ce6qg6G1 A: a/b three-layered sandwichesX: Rossmann-likeH: Rossmann-relatedT: NagB/RpiA/CoA transferase-likeF: IF-2B_CECOD (1.6)
HIF-2B_N_1e6qg6H2 A: alpha bundlesX: Translation initiation factor eIF-2B delta subunit N-terminal helical domain (From Topology)H: Translation initiation factor eIF-2B delta subunit N-terminal helical domain (From Topology)T: Translation initiation factor eIF-2B delta subunit N-terminal helical domainF: IF-2B_N_1ECOD (1.6)
HIF-2B_Ce6qg6H1 A: a/b three-layered sandwichesX: Rossmann-likeH: Rossmann-relatedT: NagB/RpiA/CoA transferase-likeF: IF-2B_CECOD (1.6)
IHexapep_2_1e6qg6I2 A: beta duplicates or obligate multimersX: Single-stranded left-handed beta-helixH: Trimeric LpxA-like enzymes (From Topology)T: Trimeric LpxA-like enzymesF: Hexapep_2_1ECOD (1.6)
INTP_transferasee6qg6I1 A: a/b three-layered sandwichesX: Nucleotide-diphospho-sugar transferases (From Topology)H: Nucleotide-diphospho-sugar transferases (From Topology)T: Nucleotide-diphospho-sugar transferasesF: NTP_transferaseECOD (1.6)
JHexapep_2_1e6qg6J1 A: beta duplicates or obligate multimersX: Single-stranded left-handed beta-helixH: Trimeric LpxA-like enzymes (From Topology)T: Trimeric LpxA-like enzymesF: Hexapep_2_1ECOD (1.6)
JNTP_transferasee6qg6J2 A: a/b three-layered sandwichesX: Nucleotide-diphospho-sugar transferases (From Topology)H: Nucleotide-diphospho-sugar transferases (From Topology)T: Nucleotide-diphospho-sugar transferasesF: NTP_transferaseECOD (1.6)
KS1_1e6qg6K3 A: beta barrelsX: OB-foldH: Nucleic acid-binding proteins (From Topology)T: Nucleic acid-binding proteinsF: S1_1ECOD (1.6)
KEIF_2_alpha_Ne6qg6K2 A: alpha arraysX: HhH/H2THH: eIF2alpha middle domain (From Topology)T: eIF2alpha middle domainF: EIF_2_alpha_NECOD (1.6)
KEIF_2_alpha_Ce6qg6K1 A: a+b two layersX: Alpha-beta plaitsH: eIF-2-alpha, C-terminal domain (From Topology)T: eIF-2-alpha, C-terminal domainF: EIF_2_alpha_CECOD (1.6)
LS1_1e6qg6L3 A: beta barrelsX: OB-foldH: Nucleic acid-binding proteins (From Topology)T: Nucleic acid-binding proteinsF: S1_1ECOD (1.6)
LEIF_2_alpha_Ne6qg6L2 A: alpha arraysX: HhH/H2THH: eIF2alpha middle domain (From Topology)T: eIF2alpha middle domainF: EIF_2_alpha_NECOD (1.6)
LEIF_2_alpha_Ce6qg6L1 A: a+b two layersX: Alpha-beta plaitsH: eIF-2-alpha, C-terminal domain (From Topology)T: eIF-2-alpha, C-terminal domainF: EIF_2_alpha_CECOD (1.6)
MGTP_EFTU_D2_2e6qg6M3 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: Alanine racemase-CF: GTP_EFTU_D2_2ECOD (1.6)
MeIF2_Ce6qg6M4 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: Aminomethyltransferase beta-barrel domainF: eIF2_CECOD (1.6)
MMnmE_helical_2nde6qg6M2 A: a/b three-layered sandwichesX: P-loop domains-likeH: P-loop domains-relatedT: P-loop containing nucleoside triphosphate hydrolasesF: MnmE_helical_2ndECOD (1.6)
MKOG0466e6qg6M1 A: few secondary structure elementsX: Rubredoxin-likeH: Rubredoxin-relatedT: Rubredoxin-relatedF: KOG0466ECOD (1.6)
O [auth N]GTP_EFTU_D2_2e6qg6N2 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: Alanine racemase-CF: GTP_EFTU_D2_2ECOD (1.6)
O [auth N]eIF2_Ce6qg6N3 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: Aminomethyltransferase beta-barrel domainF: eIF2_CECOD (1.6)
O [auth N]MnmE_helical_2nde6qg6N4 A: a/b three-layered sandwichesX: P-loop domains-likeH: P-loop domains-relatedT: P-loop containing nucleoside triphosphate hydrolasesF: MnmE_helical_2ndECOD (1.6)
O [auth N]KOG0466e6qg6N1 A: few secondary structure elementsX: Rubredoxin-likeH: Rubredoxin-relatedT: Rubredoxin-relatedF: KOG0466ECOD (1.6)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
A, B
PF01008Initiation factor 2 subunit family (IF-2B)Initiation factor 2 subunit family- Family
C, D
PF01008Initiation factor 2 subunit family (IF-2B)Initiation factor 2 subunit family- Family
G, H
PF01008Initiation factor 2 subunit family (IF-2B)Initiation factor 2 subunit family- Family
I, J
PF00483Nucleotidyl transferase (NTP_transferase)Nucleotidyl transferase- Family
K, L
PF07541Eukaryotic translation initiation factor 2 alpha subunit (EIF_2_alpha)Eukaryotic translation initiation factor 2 alpha subunit- Family
K, L
PF00575S1 RNA binding domain (S1)S1 RNA binding domainThe S1 domain occurs in a wide range of RNA associated proteins. It is structurally similar to cold shock protein which binds nucleic acids. The S1 domain has an OB-fold structure.Domain
M,
O [auth N]
PF00009Elongation factor Tu GTP binding domain (GTP_EFTU)Elongation factor Tu GTP binding domainThis domain contains a P-loop motif, also found in several other families such as Pfam:PF00071, Pfam:PF00025 and Pfam:PF00063. Elongation factor Tu consists of three structural domains, this plus two C-terminal beta barrel domains.Domain
M,
O [auth N]
PF09173Initiation factor eIF2 gamma, C terminal (eIF2_C)Initiation factor eIF2 gamma, C terminalMembers of this family, which are found in the initiation factors eIF2 and EF-Tu, adopt a structure consisting of a beta barrel with Greek key topology. They are required for formation of the ternary complex with GTP and initiator tRNA [1].Domain
M,
O [auth N]
PF03144Elongation factor Tu domain 2 (GTP_EFTU_D2)Elongation factor Tu domain 2Elongation factor Tu consists of three structural domains, this is the second domain. This domain adopts a beta barrel structure. This the second domain is involved in binding to charged tRNA [1]. This domain is also found in other proteins such as e ...Elongation factor Tu consists of three structural domains, this is the second domain. This domain adopts a beta barrel structure. This the second domain is involved in binding to charged tRNA [1]. This domain is also found in other proteins such as elongation factor G and translation initiation factor IF-2. This domain is structurally related to Pfam:PF03143, and in fact has weak sequence matches to this domain.
Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
A, B
Translation initiation factor eIF-2B subunit alpha
C, D
Translation initiation factor eIF-2B subunit beta
E, F
Translation initiation factor eIF-2B subunit gamma
G, H
Translation initiation factor eIF-2B subunit delta
I, J
Translation initiation factor eIF-2B subunit epsilon
K, L
Eukaryotic translation initiation factor 2 subunit alpha
M,
O [auth N]
Eukaryotic translation initiation factor 2 subunit gamma
N [auth O],
P
Eukaryotic translation initiation factor 2 subunit beta

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
A, B
IPR000649Initiation factor 2B-relatedFamily
A, B
IPR051501Eukaryotic initiation factor 2B subunits alpha/beta/deltaFamily
A, B
IPR042529Initiation factor 2B-like, C-terminalHomologous Superfamily
A, B
IPR037171NagB/RpiA transferase-likeHomologous Superfamily
A, B
IPR042528Translation initiation factor eIF-2B subunit alpha, N-terminalHomologous Superfamily
C, D
IPR051855Eukaryotic initiation factor 2B subunit betaFamily
C, D
IPR000649Initiation factor 2B-relatedFamily
C, D
IPR027363Methylthioribose-1-phosphate isomerase, N-terminalHomologous Superfamily
C, D
IPR042529Initiation factor 2B-like, C-terminalHomologous Superfamily
C, D
IPR037171NagB/RpiA transferase-likeHomologous Superfamily
E, F
IPR051960Eukaryotic Initiation Factor 2B Subunit GammaFamily
E, F
IPR011004Trimeric LpxA-like superfamilyHomologous Superfamily
E, F
IPR029044Nucleotide-diphospho-sugar transferasesHomologous Superfamily
G, H
IPR042529Initiation factor 2B-like, C-terminalHomologous Superfamily
G, H
IPR037171NagB/RpiA transferase-likeHomologous Superfamily
G, H
IPR000649Initiation factor 2B-relatedFamily
I, J
IPR044123Translation initiation factor eIF-2B subunit epsilon, W2 domainDomain
I, J
IPR016024Armadillo-type foldHomologous Superfamily
I, J
IPR003307W2 domainDomain
I, J
IPR035543Translation initiation factor eIF-2B subunit epsilon, N-terminalDomain
I, J
IPR011004Trimeric LpxA-like superfamilyHomologous Superfamily
I, J
IPR005835Nucleotidyl transferase domainDomain
I, J
IPR029044Nucleotide-diphospho-sugar transferasesHomologous Superfamily
I, J
IPR051956eIF2B Complex Subunit EpsilonFamily
K, L
IPR003029S1 domainDomain
K, L
IPR044126IF2a, S1-like domainDomain
K, L
IPR024054Translation initiation factor 2, alpha subunit, middle domain superfamilyHomologous Superfamily
K, L
IPR012340Nucleic acid-binding, OB-foldHomologous Superfamily
K, L
IPR024055Translation initiation factor 2, alpha subunit, C-terminalHomologous Superfamily
K, L
IPR011488Translation initiation factor 2, alpha subunitFamily
M,
O [auth N]
IPR000795Translational (tr)-type GTP-binding domainDomain
M,
O [auth N]
IPR009001Translation elongation factor EF1A/initiation factor IF2gamma, C-terminalHomologous Superfamily
M,
O [auth N]
IPR004161Translation elongation factor EFTu-like, domain 2Domain
M,
O [auth N]
IPR050543Eukaryotic Initiation Factor 2 Gamma SubunitFamily
M,
O [auth N]
IPR044128Initiation factor eIF2 gamma, GTP-binding domainDomain
M,
O [auth N]
IPR015256Initiation factor eIF2 gamma, C-terminalDomain
M,
O [auth N]
IPR009000Translation protein, beta-barrel domain superfamilyHomologous Superfamily
M,
O [auth N]
IPR044127Initiation factor eIF2 gamma, domain 2Domain
M,
O [auth N]
IPR027417P-loop containing nucleoside triphosphate hydrolaseHomologous Superfamily
N [auth O],
P
IPR016190Translation initiation factor IF2/IF5, zinc-bindingHomologous Superfamily
N [auth O],
P
IPR016189Translation initiation factor IF2/IF5, N-terminalHomologous Superfamily
N [auth O],
P
IPR002735Translation initiation factor IF2/IF5 domainDomain
N [auth O],
P
IPR045196Translation initiation factor IF2/IF5Family

Protein Modification Annotation

Modified Residue(s)
ChainResidue(s)Description
K, L
SEP Parent Component: SER

RESIDAA0037

PSI-MOD :  O-phospho-L-serine MOD:00046