6Q6I
Lysine decarboxylase A from Pseudomonas aeruginosa
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | OKR_DC_1_C | e6q6iA1 | A: a+b two layers | X: MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase (From Topology) | H: MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase (From Topology) | T: MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase | F: OKR_DC_1_C | ECOD (1.6) |
A | OKR_DC_1_3rd | e6q6iA3 | A: a+b two layers | X: C-terminal domain in some PLP-dependent transferases (From Topology) | H: C-terminal domain in some PLP-dependent transferases (From Topology) | T: C-terminal domain in some PLP-dependent transferases | F: OKR_DC_1_3rd | ECOD (1.6) |
A | OKR_DC_1_N | e6q6iA4 | A: a/b three-layered sandwiches | X: Flavodoxin-like | H: Class I glutamine amidotransferase-like | T: CheY-like | F: OKR_DC_1_N | ECOD (1.6) |
A | OKR_DC_1_N2 | e6q6iA2 | A: a/b three-layered sandwiches | X: PLP-dependent transferases (From Topology) | H: PLP-dependent transferases (From Topology) | T: PLP-dependent transferases | F: OKR_DC_1_N2 | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
---|---|---|---|---|---|---|
A | 3.40.640.10 | Alpha Beta | 3-Layer(aba) Sandwich | Aspartate Aminotransferase | domain 2 | CATH (utative) |
A | 3.90.1150.10 | Alpha Beta | Alpha-Beta Complex | Aspartate Aminotransferase, domain 1 | Aspartate Aminotransferase, domain 1 | CATH (utative) |
A | 3.90.100.10 | Alpha Beta | Alpha-Beta Complex | Ornithine Decarboxylase | Chain A, domain 4 | CATH (utative) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF03709 | Orn/Lys/Arg decarboxylase, N-terminal domain (OKR_DC_1_N) | Orn/Lys/Arg decarboxylase, N-terminal domain | This domain has a flavodoxin-like fold, and is termed the "wing" domain because of its position in the overall 3D structure. | Domain | |
PF01276 | Orn/Lys/Arg decarboxylase, major domain (OKR_DC_1) | Orn/Lys/Arg decarboxylase, major domain | - | Domain | |
PF03711 | Orn/Lys/Arg decarboxylase, C-terminal domain (OKR_DC_1_C) | Orn/Lys/Arg decarboxylase, C-terminal domain | - | Domain |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
Chains | Polymer | Molecular Function | Biological Process | Cellular Component |
---|---|---|---|---|
Biodegradative arginine decarboxylase |
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
IPR005308 | Orn/Lys/Arg decarboxylase, N-terminal | Domain | |
IPR036633 | Orn/Lys/Arg decarboxylase, C-terminal domain superfamily | Homologous Superfamily | |
IPR015424 | Pyridoxal phosphate-dependent transferase | Homologous Superfamily | |
IPR015421 | Pyridoxal phosphate-dependent transferase, major domain | Homologous Superfamily | |
IPR015422 | Pyridoxal phosphate-dependent transferase, small domain | Homologous Superfamily | |
IPR000310 | Orn/Lys/Arg decarboxylase, major domain | Domain | |
IPR011193 | Ornithine/lysine/arginine decarboxylase | Family | |
IPR008286 | Orn/Lys/Arg decarboxylase, C-terminal | Domain |