6Q3M
Structure of CHD4 PHD2 - tandem chromodomains
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
C | SCOP2B Superfamily | FYVE/PHD zinc finger | 8032792 | 3001459 | SCOP2B (2021-05-27) |
C | SCOP2B Superfamily | Chromo domain-like | 8072503 | 3000161 | SCOP2B (2021-05-27) |
D | SCOP2B Superfamily | Chromo domain-like | 8072503 | 3000161 | SCOP2B (2021-05-27) |
D | SCOP2B Superfamily | FYVE/PHD zinc finger | 8032792 | 3001459 | SCOP2B (2021-05-27) |
A | SCOP2B Superfamily | FYVE/PHD zinc finger | 8032792 | 3001459 | SCOP2B (2021-05-27) |
A | SCOP2B Superfamily | Chromo domain-like | 8072503 | 3000161 | SCOP2B (2021-05-27) |
B | SCOP2B Superfamily | Chromo domain-like | 8072503 | 3000161 | SCOP2B (2021-05-27) |
B | SCOP2B Superfamily | FYVE/PHD zinc finger | 8032792 | 3001459 | SCOP2B (2021-05-27) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
C | PF00385 | e6q3mC2 | A: beta barrels | X: SH3 | H: Chromo domain-like (From Topology) | T: Chromo domain-like | F: PF00385 | ECOD (1.6) |
C | PF00628 | e6q3mC3 | A: few secondary structure elements | X: RING/U-box-like | H: RING/U-box-like | T: FYVE/PHD zinc finger | F: PF00628 | ECOD (1.6) |
D | PF00385 | e6q3mD1 | A: beta barrels | X: SH3 | H: Chromo domain-like (From Topology) | T: Chromo domain-like | F: PF00385 | ECOD (1.6) |
D | PF00628 | e6q3mD3 | A: few secondary structure elements | X: RING/U-box-like | H: RING/U-box-like | T: FYVE/PHD zinc finger | F: PF00628 | ECOD (1.6) |
A | PF00385 | e6q3mA2 | A: beta barrels | X: SH3 | H: Chromo domain-like (From Topology) | T: Chromo domain-like | F: PF00385 | ECOD (1.6) |
A | PF00628 | e6q3mA3 | A: few secondary structure elements | X: RING/U-box-like | H: RING/U-box-like | T: FYVE/PHD zinc finger | F: PF00628 | ECOD (1.6) |
B | PF00385 | e6q3mB2 | A: beta barrels | X: SH3 | H: Chromo domain-like (From Topology) | T: Chromo domain-like | F: PF00385 | ECOD (1.6) |
B | PF00628 | e6q3mB3 | A: few secondary structure elements | X: RING/U-box-like | H: RING/U-box-like | T: FYVE/PHD zinc finger | F: PF00628 | ECOD (1.6) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF00628 | PHD-finger (PHD) | PHD-finger | PHD folds into an interleaved type of Zn-finger chelating 2 Zn ions in a similar manner to that of the RING and FYVE domains [2]. Several PHD fingers have been identified as binding modules of methylated histone H3 [3]. | Domain | |
PF00385 | Chromo (CHRromatin Organisation MOdifier) domain (Chromo) | Chromo (CHRromatin Organisation MOdifier) domain | - | Domain |