Annotations: 6PPD

Kaposi's sarcoma-associated herpesvirus (KSHV), C1 penton vertex register, CATC-absent structure

External Resource: Annotation

Domain Annotation: ECOD Classification
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
P [auth X]	AAA	e6ppdX1	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: AAA	ECOD (v295.2)
G [auth 4]	AAA	e6ppd41	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: AAA	ECOD (v295.2)
E [auth T]	AAA	e6ppdT1	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: AAA	ECOD (v295.2)
D [auth S]	AAA	e6ppdS1	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: AAA	ECOD (v295.2)
B [auth W]	AAA	e6ppdW1	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: AAA	ECOD (v295.2)
O [auth 1]	EBV-NA1	e6ppd11	A: alpha arrays	X: Nat/Ivy	H: Acyl-CoA N-acyltransferases (Nat)	T: Acyl-CoA N-acyltransferases (Nat)	F: EBV-NA1	ECOD (v295.2)
H [auth A]	EBV-NA1	e6ppdA1	A: alpha arrays	X: Nat/Ivy	H: Acyl-CoA N-acyltransferases (Nat)	T: Acyl-CoA N-acyltransferases (Nat)	F: EBV-NA1	ECOD (v295.2)
F [auth 3]	EBV-NA1	e6ppd31	A: alpha arrays	X: Nat/Ivy	H: Acyl-CoA N-acyltransferases (Nat)	T: Acyl-CoA N-acyltransferases (Nat)	F: EBV-NA1	ECOD (v295.2)
C [auth 2]	EBV-NA1	e6ppd21	A: alpha arrays	X: Nat/Ivy	H: Acyl-CoA N-acyltransferases (Nat)	T: Acyl-CoA N-acyltransferases (Nat)	F: EBV-NA1	ECOD (v295.2)
A [auth 0]	EBV-NA1	e6ppd01	A: alpha arrays	X: Nat/Ivy	H: Acyl-CoA N-acyltransferases (Nat)	T: Acyl-CoA N-acyltransferases (Nat)	F: EBV-NA1	ECOD (v295.2)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
I [auth 5], L [auth b]	PF03327	Herpesvirus capsid shell protein VP19C (Herpes_VP19C)	Herpesvirus capsid shell protein VP19C	-	Family
B [auth W], D [auth S], E [auth T], G [auth 4], P [auth X]	PF03122	Herpes virus major capsid protein (Herpes_MCP)	Herpes virus major capsid protein	-	Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
J [auth 6], K [auth 7], M [auth c], N [auth d]	Triplex capsid protein 2	structural molecule activity	-	viral capsid virion component
I [auth 5], L [auth b]	Triplex capsid protein 1	DNA binding binding nucleic acid binding	virion assembly viral process viral capsid assembly viral life cycle	viral capsid virion component host intracellular membrane-bounded organelle host cellular component host intracellular part cellular anatomical structure host cell part host intracellular region host cell nucleus other organism part host intracellular organelle
B [auth W], D [auth S], E [auth T], G [auth 4], P [auth X]	Major capsid protein	structural molecule activity	-	host intracellular membrane-bounded organelle host cellular component host intracellular part cellular anatomical structure host cell part host intracellular region host cell nucleus other organism part host intracellular organelle viral capsid icosahedral viral capsid virion component T=16 icosahedral viral capsid
A [auth 0], C [auth 2], F [auth 3], H [auth A], O [auth 1]	Small capsomere-interacting protein	-	viral process	viral capsid virion component host intracellular membrane-bounded organelle host cellular component host intracellular part cellular anatomical structure host cell part host intracellular region host cell nucleus other organism part host intracellular organelle

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
J [auth 6], K [auth 7], M [auth c], N [auth d]	IPR002690	Herpesvirus capsid protein 2	Family
I [auth 5], L [auth b]	IPR004999	Herpesvirus capsid shell protein 1	Family
B [auth W], D [auth S], E [auth T], G [auth 4], P [auth X]	IPR000912	Herpesvirus major capsid protein	Family
B [auth W], D [auth S], E [auth T], G [auth 4], P [auth X]	IPR023233	Herpesvirus major capsid protein, upper domain superfamily	Homologous Superfamily
A [auth 0], C [auth 2], F [auth 3], H [auth A], O [auth 1]	IPR009299	Gammaherpesvirus capsid	Family

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.

6PPD | pdb_00006ppd

Kaposi's sarcoma-associated herpesvirus (KSHV), C1 penton vertex register, CATC-absent structure

External Resource: Annotation

Domain Annotation: ECOD Classification ECOD Database Homepage

Protein Family Annotation Pfam Database Homepage

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

InterPro: Protein Family Classification InterPro Database Homepage