Annotations: 6PPD

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A [auth 0]	EBV-NA1	e6ppd01	A: beta barrels	X: jelly-roll	H: DUF1107-like	T: DUF1107-like	F: EBV-NA1	ECOD (v294.2)
C [auth 2]	EBV-NA1	e6ppd21	A: beta barrels	X: jelly-roll	H: DUF1107-like	T: DUF1107-like	F: EBV-NA1	ECOD (v294.2)
F [auth 3]	EBV-NA1	e6ppd31	A: beta barrels	X: jelly-roll	H: DUF1107-like	T: DUF1107-like	F: EBV-NA1	ECOD (v294.2)
H [auth A]	EBV-NA1	e6ppdA1	A: beta barrels	X: jelly-roll	H: DUF1107-like	T: DUF1107-like	F: EBV-NA1	ECOD (v294.2)
O [auth 1]	EBV-NA1	e6ppd11	A: beta barrels	X: jelly-roll	H: DUF1107-like	T: DUF1107-like	F: EBV-NA1	ECOD (v294.2)
B [auth W]	MIF4G	e6ppdW1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: MIF4G	ECOD (v294.2)
D [auth S]	MIF4G	e6ppdS1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: MIF4G	ECOD (v294.2)
E [auth T]	MIF4G	e6ppdT1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: MIF4G	ECOD (v294.2)
G [auth 4]	MIF4G	e6ppd41	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: MIF4G	ECOD (v294.2)
P [auth X]	MIF4G	e6ppdX1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: MIF4G	ECOD (v294.2)

Chains	Accession	Name	Description	Comments	Source
B [auth W], D [auth S], E [auth T], G [auth 4], P [auth X]	PF03122	Herpes virus major capsid protein (Herpes_MCP)	Herpes virus major capsid protein	-	Family
I [auth 5], L [auth b]	PF03327	Herpesvirus capsid shell protein VP19C (Herpes_VP19C)	Herpesvirus capsid shell protein VP19C	-	Family

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A [auth 0], C [auth 2], F [auth 3], H [auth A], O [auth 1]	Small capsomere-interacting protein	-	viral process	viral capsid virion component host intracellular membrane-bounded organelle host cellular component host intracellular part cellular anatomical structure host cell part host intracellular region host cell nucleus other organism part host intracellular organelle
B [auth W], D [auth S], E [auth T], G [auth 4], P [auth X]	Major capsid protein	structural molecule activity	-	host intracellular membrane-bounded organelle host cellular component host intracellular part cellular anatomical structure host cell part host intracellular region host cell nucleus other organism part host intracellular organelle viral capsid icosahedral viral capsid virion component T=16 icosahedral viral capsid
I [auth 5], L [auth b]	Triplex capsid protein 1	DNA binding binding nucleic acid binding	virion assembly viral process viral capsid assembly viral life cycle	viral capsid virion component host intracellular membrane-bounded organelle host cellular component host intracellular part cellular anatomical structure host cell part host intracellular region host cell nucleus other organism part host intracellular organelle
J [auth 6], K [auth 7], M [auth c], N [auth d]	Triplex capsid protein 2	structural molecule activity	-	viral capsid virion component

Chains	Accession	Name	Type
A [auth 0], C [auth 2], F [auth 3], H [auth A], O [auth 1]	IPR009299	Gammaherpesvirus capsid	Family
B [auth W], D [auth S], E [auth T], G [auth 4], P [auth X]	IPR000912	Herpesvirus major capsid protein	Family
B [auth W], D [auth S], E [auth T], G [auth 4], P [auth X]	IPR023233	Herpesvirus major capsid protein, upper domain superfamily	Homologous Superfamily
I [auth 5], L [auth b]	IPR004999	Herpesvirus capsid shell protein 1	Family
J [auth 6], K [auth 7], M [auth c], N [auth d]	IPR002690	Herpesvirus capsid protein 2	Family

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.

6PPD | pdb_00006ppd