6PHW
SpAga D472N structure in complex with melibiose
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | Glyco_hydro_36C | e6phwA2 | A: beta sandwiches | X: Glycosyl hydrolase domain-like | H: Glycosyl hydrolase domain (From Topology) | T: Glycosyl hydrolase domain | F: Glyco_hydro_36C | ECOD (1.6) |
A | Glyco_hydro_36N | e6phwA3 | A: beta sandwiches | X: Glycosyl hydrolase domain-like | H: supersandwich (From Topology) | T: supersandwich | F: Glyco_hydro_36N | ECOD (1.6) |
A | Melibiase | e6phwA1 | A: a/b barrels | X: TIM beta/alpha-barrel | H: TIM barrels (From Topology) | T: TIM barrels | F: Melibiase | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
---|---|---|---|---|---|---|
A | 2.70.98.60 | Mainly Beta | Distorted Sandwich | Beta-galactosidase | Chain A, domain 5 | CATH (utative) |
A | 3.20.20.70 | Alpha Beta | Alpha-Beta Barrel | TIM Barrel | Aldolase class I | CATH (utative) |
A | 2.60.40.1180 | Mainly Beta | Sandwich | Immunoglobulin-like | Golgi alpha-mannosidase II | CATH (utative) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF02065 | Melibiase (Melibiase) | Melibiase | - | Family | |
PF16875 | Glycosyl hydrolase family 36 N-terminal domain (Glyco_hydro_36N) | Glycosyl hydrolase family 36 N-terminal domain | This domain is found at the N-terminus of many family 36 glycoside hydrolases. It has a beta-supersandwich fold [1]. | Domain | |
PF16874 | Glycosyl hydrolase family 36 C-terminal domain (Glyco_hydro_36C) | Glycosyl hydrolase family 36 C-terminal domain | This domain is found at the C-terminus of many family 36 glycoside hydrolases. It has a beta-sandwich structure with a Greek key motif [1]. | Domain |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
Chains | Polymer | Molecular Function | Biological Process | Cellular Component |
---|---|---|---|---|
Alpha-galactosidase | - |
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
IPR000111 | Glycoside hydrolase family 27/36, conserved site | Conserved Site | |
IPR038417 | Alpha-galactosidase, N-terminal domain superfamily | Homologous Superfamily | |
IPR031704 | Glycosyl hydrolase family 36, N-terminal | Domain | |
IPR031705 | Glycosyl hydrolase family 36, C-terminal | Domain | |
IPR050985 | Alpha-glycosidase and related enzymes | Family | |
IPR002252 | Glycoside hydrolase family 36 | Family | |
IPR017853 | Glycoside hydrolase superfamily | Homologous Superfamily | |
IPR013785 | Aldolase-type TIM barrel | Homologous Superfamily | |
IPR013780 | Glycosyl hydrolase, all-beta | Homologous Superfamily |