6PCU
VP8* of a G2P[4] human rotavirus in complex with scFv antibody 9
External Resource: Annotation
Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
A | SCOP2B Superfamily | Concanavalin A-like lectins/glucanases | 8077032 | 3000120 | SCOP2B (2022-06-29) |
C [auth D] | SCOP2B Superfamily | Concanavalin A-like lectins/glucanases | 8077032 | 3000120 | SCOP2B (2022-06-29) |
E [auth G] | SCOP2B Superfamily | Concanavalin A-like lectins/glucanases | 8077032 | 3000120 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | PF00426 | e6pcuA1 | A: beta sandwiches | X: jelly-roll | H: Concanavalin A-like | T: Concanavalin A-like lectins/glucanases | F: PF00426 | ECOD (1.6) |
C [auth D] | PF00426 | e6pcuD1 | A: beta sandwiches | X: jelly-roll | H: Concanavalin A-like | T: Concanavalin A-like lectins/glucanases | F: PF00426 | ECOD (1.6) |
E [auth G] | PF00426 | e6pcuG1 | A: beta sandwiches | X: jelly-roll | H: Concanavalin A-like | T: Concanavalin A-like lectins/glucanases | F: PF00426 | ECOD (1.6) |
B | PF07686 | e6pcuB1 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: PF07686 | ECOD (1.6) |
D [auth E] | PF07686 | e6pcuE1 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: PF07686 | ECOD (1.6) |
F [auth H] | PF07686 | e6pcuH1 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: PF07686 | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
---|---|---|---|---|---|---|
A | 2.60.120.200 | Mainly Beta | Sandwich | Jelly Rolls | CATH (utative) | |
C [auth D] | 2.60.120.200 | Mainly Beta | Sandwich | Jelly Rolls | CATH (utative) | |
E [auth G] | 2.60.120.200 | Mainly Beta | Sandwich | Jelly Rolls | CATH (utative) |
IMGT Antibody Annotation IMGT Database Homepage
Chain | Protein Name | Description | Organism Name | Gene Allele Name(s) | Domain Name(s) | Receptor Type | Receptor Description | Provenance Source |
---|---|---|---|---|---|---|---|---|
B, D [auth E], F [auth H] | scFv 9 | V-LAMBDA | Homo sapiens (human) | IGLV9-49*01, IGLV9-49*02, IGLV9-49*03, IGLJ2*01, IGLJ3*02, IGLJ3*01 | V-DOMAIN V-LAMBDA | IG | FV-HEAVY_LAMBDA | IMGT (202431-0) |
SAbDab Antibody Annotation SAbDab Database Homepage
Chain | Chain Class | Chain Subclass | Chain Type | Antigen Name(s) | Provenance Source |
---|---|---|---|---|---|
B, D [auth E], F [auth H] | Light Chain | IGLV9 | Lambda | outer capsid protein vp4 | SAbDab (2024-08-09) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
A, C [auth D], E [auth G] | PF00426 | Outer Capsid protein VP4 (Hemagglutinin) Concanavalin-like domain (VP4_haemagglut) | Outer Capsid protein VP4 (Hemagglutinin) Concanavalin-like domain | This entry represents the N-terminal concanavalin-like domain from the VP4 protein of rotavirus. | Domain |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
Chains | Polymer | Molecular Function | Biological Process | Cellular Component |
---|---|---|---|---|
A, C [auth D], E [auth G] | Outer capsid protein VP4 | - |
| |
B, D [auth E], F [auth H] | Variable domain of antibody scFv9 | - | - | - |
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
A, C [auth D], E [auth G] | IPR000416 | Haemagglutinin outer capsid protein VP4, concanavalin-like domain | Domain |
A, C [auth D], E [auth G] | IPR013320 | Concanavalin A-like lectin/glucanase domain superfamily | Homologous Superfamily |
A, C [auth D], E [auth G] | IPR035330 | Rotavirus VP4, membrane interaction domain | Domain |
A, C [auth D], E [auth G] | IPR038017 | Rotavirus VP4, membrane interaction domain superfamily | Homologous Superfamily |