Annotations: 6PCI

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A	Filo_glycop	e6pciA1	A: a+b complex topology	X: Envelope glycoprotein GP1 (From Topology)	H: Envelope glycoprotein GP1 (From Topology)	T: Envelope glycoprotein GP1	F: Filo_glycop	ECOD (1.6)
G [auth B]	Filo_glycop	e6pciB1	A: a+b complex topology	X: Envelope glycoprotein GP1 (From Topology)	H: Envelope glycoprotein GP1 (From Topology)	T: Envelope glycoprotein GP1	F: Filo_glycop	ECOD (1.6)
M [auth C]	Filo_glycop	e6pciC1	A: a+b complex topology	X: Envelope glycoprotein GP1 (From Topology)	H: Envelope glycoprotein GP1 (From Topology)	T: Envelope glycoprotein GP1	F: Filo_glycop	ECOD (1.6)
B [auth H]	V-set_12	e6pciH1	A: beta sandwiches	X: Immunoglobulin-like beta-sandwich	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: V-set_12	ECOD (1.6)
H [auth I]	V-set_12	e6pciI1	A: beta sandwiches	X: Immunoglobulin-like beta-sandwich	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: V-set_12	ECOD (1.6)
N [auth J]	V-set_12	e6pciJ1	A: beta sandwiches	X: Immunoglobulin-like beta-sandwich	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: V-set_12	ECOD (1.6)
C [auth K]	V-set	e6pciK1	A: beta sandwiches	X: Immunoglobulin-like beta-sandwich	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: V-set	ECOD (1.6)
I [auth L]	V-set	e6pciL1	A: beta sandwiches	X: Immunoglobulin-like beta-sandwich	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: V-set	ECOD (1.6)
O [auth M]	V-set	e6pciM1	A: beta sandwiches	X: Immunoglobulin-like beta-sandwich	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: V-set	ECOD (1.6)
D	Ebola-like_HR1-HR2	e6pciD1	A: a+b duplicates or obligate multimers	X: Envelope glycoprotein GP2-related (From Topology)	H: Envelope glycoprotein GP2-related (From Topology)	T: Envelope glycoprotein GP2-related	F: Ebola-like_HR1-HR2	ECOD (1.6)
J [auth E]	Ebola-like_HR1-HR2	e6pciE1	A: a+b duplicates or obligate multimers	X: Envelope glycoprotein GP2-related (From Topology)	H: Envelope glycoprotein GP2-related (From Topology)	T: Envelope glycoprotein GP2-related	F: Ebola-like_HR1-HR2	ECOD (1.6)
P [auth F]	Ebola-like_HR1-HR2	e6pciF1	A: a+b duplicates or obligate multimers	X: Envelope glycoprotein GP2-related (From Topology)	H: Envelope glycoprotein GP2-related (From Topology)	T: Envelope glycoprotein GP2-related	F: Ebola-like_HR1-HR2	ECOD (1.6)
E [auth Q]	V-set	e6pciQ1	A: beta sandwiches	X: Immunoglobulin-like beta-sandwich	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: V-set	ECOD (1.6)
K [auth R]	V-set	e6pciR1	A: beta sandwiches	X: Immunoglobulin-like beta-sandwich	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: V-set	ECOD (1.6)
Q [auth S]	V-set	e6pciS1	A: beta sandwiches	X: Immunoglobulin-like beta-sandwich	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: V-set	ECOD (1.6)
F [auth N]	V-set_8	e6pciN1	A: beta sandwiches	X: Immunoglobulin-like beta-sandwich	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: V-set_8	ECOD (1.6)
L [auth O]	V-set_8	e6pciO1	A: beta sandwiches	X: Immunoglobulin-like beta-sandwich	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: V-set_8	ECOD (1.6)
R [auth P]	V-set_8	e6pciP1	A: beta sandwiches	X: Immunoglobulin-like beta-sandwich	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: V-set_8	ECOD (1.6)

IMGT Antibody Annotation IMGT Database Homepage

Chain	Protein Name	Description	Organism Name	Gene Allele Name(s)	Domain Name(s)	Receptor Type	Receptor Description	Provenance Source
B [auth H], H [auth I], N [auth J]	mAb rEBOV-548, neutralization	1C-LIKE	Homo sapiens (human)	IGHV3-3002, IGHV3-30-502, IGHE01, IGHE02, IGHE03, IGHE04	V-DOMAIN VH, C-DOMAIN CH2	IG	(VH-C-BETA-2-CH1)	IMGT (202442-0)
C [auth K], I [auth L], O [auth M]	mAb rEBOV-548, neutralization	L-KAPPA	Homo sapiens (human)	IGKV1-1201, IGKV1-1202, IGKV1D-1201, IGKV1D-1202, IGKJ201, IGKC01	V-DOMAIN V-KAPPA, C-DOMAIN C-KAPPA	IG	(VH-C-BETA-2-CH1)	IMGT (202442-0)
E [auth Q], K [auth R], Q [auth S]	mAb rEBOV-520, neutralization	L-KAPPA	Homo sapiens (human)	IGKV3-2001, IGKJ201, IGKC*01	V-DOMAIN V-KAPPA, C-DOMAIN C-KAPPA	IG	(VH-C-BETA-2-CH1)	IMGT (202442-0)
F [auth N], L [auth O], R [auth P]	mAb rEBOV-520, neutralization	VH-CH1	Homo sapiens (human)	IGHV4-408, IGHJ101, IGHE01, IGHE02, IGHE03, IGHE04	V-DOMAIN VH, C-DOMAIN CH2	IG	(VH-C-BETA-2-CH1)	IMGT (202442-0)

SAbDab Antibody Annotation SAbDab Database Homepage

Chain	Chain Class	Chain Subclass	Chain Type	Antigen Name(s)	Provenance Source
B [auth H], H [auth I], N [auth J]	Heavy Chain	IGHV3	-	virion spike glycoprotein	SAbDab (2024-10-25)
C [auth K], I [auth L], O [auth M]	Light Chain	IGKV1	Kappa	virion spike glycoprotein	SAbDab (2024-10-25)
E [auth Q], K [auth R], Q [auth S]	Light Chain	IGKV3	Kappa	virion spike glycoprotein \| virion spike glycoprotein,virion spike glycoprotein,ebolavirus (makona) gp2	SAbDab (2024-10-25)
F [auth N], L [auth O], R [auth P]	Heavy Chain	IGHV4	-	virion spike glycoprotein \| virion spike glycoprotein,virion spike glycoprotein,ebolavirus (makona) gp2	SAbDab (2024-10-25)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, G [auth B], M [auth C]	PF01611	Filovirus glycoprotein (Filo_glycop)	Filovirus glycoprotein	-	Family
D, J [auth E], P [auth F]	PF22307	Envelope glycoprotein GP2-like, HR1-HR2 (Ebola-like_HR1-HR2)	Envelope glycoprotein GP2-like, HR1-HR2	This entry spans heptad repeats 1 and 2 of the glycoprotein (GP) from Ebola and Marburg viruses [1-5]. Viral infection involves the formation of a trimer-of-hairpins structure (three HR1s helices, buttressed by three HR2 helices lying in antiparallel ...	This entry spans heptad repeats 1 and 2 of the glycoprotein (GP) from Ebola and Marburg viruses [1-5]. Viral infection involves the formation of a trimer-of-hairpins structure (three HR1s helices, buttressed by three HR2 helices lying in antiparallel orientation). This domain may have been acquired via horizontal transfer from retroviruses.	Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, G [auth B], M [auth C]	Virion spike glycoprotein	-	-	membrane cellular anatomical entity extracellular region
B [auth H], H [auth I], N [auth J]	rEBOV-548 Fab heavy chain	-	-	-
C [auth K], I [auth L], O [auth M]	rEBOV-548 Fab light chain	-	-	-
D, J [auth E], P [auth F]	Virion spike glycoprotein,Virion spike glycoprotein,Ebola Virus (Makona) GP2	-	-	membrane cellular anatomical entity extracellular region
E [auth Q], K [auth R], Q [auth S]	rEBOV-520 Fab light chain	-	-	-
F [auth N], L [auth O], R [auth P]	rEBOV-520 Fab heavy chain	-	-	-

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, G [auth B], M [auth C]	IPR014625	Filoviruses glycoprotein	Family
A, G [auth B], M [auth C]	IPR002561	Filoviruses glycoprotein, extracellular domain	Domain
D, J [auth E], P [auth F]	IPR014625	Filoviruses glycoprotein	Family
D, J [auth E], P [auth F]	IPR002561	Filoviruses glycoprotein, extracellular domain	Domain

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.