Annotations: 6PBD

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A		e6pbdA01	A: beta barrels	X: Ribonuclease H-like	H: P-loop domains-related	T: P-loop containing nucleoside triphosphate hydrolases	F:	ECOD (v294.2)

Chains	Accession	Name	Description	Comments	Source
A, B	PF18755	Restriction Enzyme Adenine Methylase Associated (RAMA)	Restriction Enzyme Adenine Methylase Associated	An alpha+beta fold domain associated with restriction enzymes across prokaryotes and fused to JAB deubiquitinases, and chromatin proteins in a wide range of eukaryotes. The domain is predicted to function as a modified-DNA reader domain [1].	Domain
A, B	PF01555	DNA methylase (N6_N4_Mtase)	DNA methylase	Members of this family are DNA methylases. The family contains both N-4 cytosine-specific DNA methylases and N-6 Adenine-specific DNA methylases.	Domain

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
D [auth Y]	DNA (5'-D(GPCPTPTPGPGPGPAPTPTPCPAPTPTPGPAPAPTP*C)-3')	-	-	-
C [auth X]	DNA (5'-D(CPGPAPTPTPCPAPAPTPGPAPAPTPCPCPCPAPAP*G)-3')	-	-	-
A, B	Modification methylase CcrMI	DNA binding binding nucleic acid binding transferase activity, transferring one-carbon groups N-methyltransferase activity transferase activity methyltransferase activity catalytic activity DNA-methyltransferase activity catalytic activity, acting on DNA site-specific DNA-methyltransferase (adenine-specific) activity catalytic activity, acting on a nucleic acid S-adenosylmethionine-dependent methyltransferase activity	methylation metabolic process cellular process nucleobase-containing compound metabolic process DNA replication primary metabolic process DNA metabolic process macromolecule metabolic process nucleic acid metabolic process	cellular anatomical structure intracellular anatomical structure cytoplasm

Chains	Accession	Name	Type
A, B	IPR002052	DNA methylase, N-6 adenine-specific, conserved site	Conserved Site
A, B	IPR040843	Restriction enzyme adenine methylase associated	Domain
A, B	IPR002941	DNA methylase N-4/N-6	Domain
A, B	IPR001091	Restriction/modification DNA-methyltransferase	Family
A, B	IPR029063	S-adenosyl-L-methionine-dependent methyltransferase superfamily	Homologous Superfamily

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.

6PBD | pdb_00006pbd