6P59
Crystal structure of SIVrcm Vif-CBFbeta-ELOB-ELOC complex
External Resource: Annotation
Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage
Chains | Domain Info | Class | Fold | Superfamily | Family | Domain | Species | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
B [auth W] | d6p59w_ | Alpha and beta proteins (a+b) | beta-Grasp (ubiquitin-like) | Ubiquitin-like | Ubiquitin-related | Elongin B | Human (Homo sapiens ) [TaxId: 9606 ], | SCOPe (2.08) |
F [auth D] | d6p59d_ | Alpha and beta proteins (a+b) | beta-Grasp (ubiquitin-like) | Ubiquitin-like | Ubiquitin-related | Elongin B | Human (Homo sapiens ) [TaxId: 9606 ], | SCOPe (2.08) |
C [auth Z] | d6p59z_ | Alpha and beta proteins (a+b) | POZ domain | POZ domain | BTB/POZ domain | Elongin C | Human (Homo sapiens ) [TaxId: 9606 ], | SCOPe (2.08) |
G [auth E] | d6p59e_ | Alpha and beta proteins (a+b) | POZ domain | POZ domain | BTB/POZ domain | Elongin C | Human (Homo sapiens ) [TaxId: 9606 ], | SCOPe (2.08) |
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
A [auth C] | SCOP2B Superfamily | Core binding factor beta, CBF | 8042548 | 3001169 | SCOP2B (2022-06-29) |
E [auth A] | SCOP2B Superfamily | Core binding factor beta, CBF | 8042548 | 3001169 | SCOP2B (2022-06-29) |
B [auth W] | SCOP2B Superfamily | Ubiquitin-like | 8038575 | 3000157 | SCOP2B (2022-06-29) |
F [auth D] | SCOP2B Superfamily | Ubiquitin-like | 8038575 | 3000157 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A [auth C] | CBF_beta | e6p59C1 | A: beta barrels | X: CBF-like | H: Core binding factor beta, CBF (From Topology) | T: Core binding factor beta, CBF | F: CBF_beta | ECOD (1.6) |
E [auth A] | CBF_beta | e6p59A1 | A: beta barrels | X: CBF-like | H: Core binding factor beta, CBF (From Topology) | T: Core binding factor beta, CBF | F: CBF_beta | ECOD (1.6) |
B [auth W] | ubiquitin_2 | e6p59W1 | A: a+b two layers | X: beta-Grasp | H: Ubiquitin-related | T: Ubiquitin-like | F: ubiquitin_2 | ECOD (1.6) |
F [auth D] | ubiquitin_2 | e6p59D1 | A: a+b two layers | X: beta-Grasp | H: Ubiquitin-related | T: Ubiquitin-like | F: ubiquitin_2 | ECOD (1.6) |
C [auth Z] | Skp1_POZ_1 | e6p59Z1 | A: a+b two layers | X: POZ domain (From Topology) | H: POZ domain (From Topology) | T: POZ domain | F: Skp1_POZ_1 | ECOD (1.6) |
G [auth E] | Skp1_POZ_1 | e6p59E1 | A: a+b two layers | X: POZ domain (From Topology) | H: POZ domain (From Topology) | T: POZ domain | F: Skp1_POZ_1 | ECOD (1.6) |
D [auth F] | Vif | e6p59F1 | A: a+b two layers | X: Virion infectivity factor Vif (From Topology) | H: Virion infectivity factor Vif (From Topology) | T: Virion infectivity factor Vif | F: Vif | ECOD (1.6) |
H [auth B] | Vif | e6p59B1 | A: a+b two layers | X: Virion infectivity factor Vif (From Topology) | H: Virion infectivity factor Vif (From Topology) | T: Virion infectivity factor Vif | F: Vif | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
---|---|---|---|---|---|---|
A [auth C] | 2.40.250.10 | Mainly Beta | Beta Barrel | Polyomavirus Enhancer Binding Protein 2 | Chain: A | CATH (utative) |
E [auth A] | 2.40.250.10 | Mainly Beta | Beta Barrel | Polyomavirus Enhancer Binding Protein 2 | Chain: A | CATH (utative) |
B [auth W] | 3.10.20.90 | Alpha Beta | Roll | Ubiquitin-like (UB roll) | Phosphatidylinositol 3-kinase Catalytic Subunit | CATH (utative) |
F [auth D] | 3.10.20.90 | Alpha Beta | Roll | Ubiquitin-like (UB roll) | Phosphatidylinositol 3-kinase Catalytic Subunit | CATH (utative) |
C [auth Z] | 3.30.710.10 | Alpha Beta | 2-Layer Sandwich | Potassium Channel Kv1.1 | Chain A | CATH (utative) |
G [auth E] | 3.30.710.10 | Alpha Beta | 2-Layer Sandwich | Potassium Channel Kv1.1 | Chain A | CATH (utative) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
B [auth W], F [auth D] | PF00240 | Ubiquitin family (ubiquitin) | Ubiquitin family | This family contains a number of ubiquitin-like proteins: SUMO (smt3 homologue) (see Swiss:Q02724), Nedd8 (see Swiss:P29595), Elongin B (see Swiss:Q15370), Rub1 (see Swiss:Q9SHE7), and Parkin (see Swiss:O60260). A number of them are thought to carry ... | Domain |
C [auth Z], G [auth E] | PF03931 | Skp1 family, tetramerisation domain (Skp1_POZ) | Skp1 family, tetramerisation domain | - | Domain |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
A [auth C], E [auth A] | IPR003417 | Core-binding factor, beta subunit | Family |
A [auth C], E [auth A] | IPR036552 | Core-binding factor, beta subunit superfamily | Homologous Superfamily |
B [auth W], F [auth D] | IPR000626 | Ubiquitin-like domain | Domain |
B [auth W], F [auth D] | IPR039049 | Elongin B | Family |
B [auth W], F [auth D] | IPR029071 | Ubiquitin-like domain superfamily | Homologous Superfamily |
C [auth Z], G [auth E] | IPR016073 | SKP1 component, POZ domain | Domain |
C [auth Z], G [auth E] | IPR001232 | S-phase kinase-associated protein 1-like | Family |
C [auth Z], G [auth E] | IPR039948 | Elongin-C | Family |
C [auth Z], G [auth E] | IPR011333 | SKP1/BTB/POZ domain superfamily | Homologous Superfamily |
D [auth F], H [auth B] | IPR000475 | Retroviral Vif (Viral infectivity) protein | Family |