6OYH

Crystal structure of MraY bound to carbacaprazamycin

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
SAbDab Antibody Annotation
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification
Membrane Protein Annotation: OPM
Membrane Protein Annotation: PDBTM
Membrane Protein Annotation: MemProtMD
Membrane Protein Annotation: mpstruc

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
A [auth E]	d6oyhe1	All beta proteins	Immunoglobulin-like beta-sandwich	Immunoglobulin	V set domains (antibody variable domain-like)	automated matches	llama (Lama glama ) [TaxId: 9844 ],	SCOPe (2.08)
A [auth E]	d6oyhe2	Artifacts	Tags	Tags	Tags	C-terminal Tags	llama (Lama glama ) [TaxId: 9844 ],	SCOPe (2.08)
C [auth G]	d6oyhg_	All beta proteins	Immunoglobulin-like beta-sandwich	Immunoglobulin	V set domains (antibody variable domain-like)	automated matches	llama (Lama glama ) [TaxId: 9844 ],	SCOPe (2.08)
E [auth F]	d6oyhf_	All beta proteins	Immunoglobulin-like beta-sandwich	Immunoglobulin	V set domains (antibody variable domain-like)	automated matches	llama (Lama glama ) [TaxId: 9844 ],	SCOPe (2.08)
G [auth H]	d6oyhh1	All beta proteins	Immunoglobulin-like beta-sandwich	Immunoglobulin	V set domains (antibody variable domain-like)	automated matches	llama (Lama glama ) [TaxId: 9844 ],	SCOPe (2.08)
G [auth H]	d6oyhh2	Artifacts	Tags	Tags	Tags	C-terminal Tags	llama (Lama glama ) [TaxId: 9844 ],	SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
B [auth A]	SCOP2B Superfamily	MraY-like	8045121	3002333	SCOP2B (2022-06-29)
D [auth C]	SCOP2B Superfamily	MraY-like	8045121	3002333	SCOP2B (2022-06-29)
F [auth B]	SCOP2B Superfamily	MraY-like	8045121	3002333	SCOP2B (2022-06-29)
H [auth D]	SCOP2B Superfamily	MraY-like	8045121	3002333	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A [auth E]	V-set_12	e6oyhE1	A: beta sandwiches	X: Immunoglobulin-like beta-sandwich	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: V-set_12	ECOD (1.6)
C [auth G]	V-set_8	e6oyhG1	A: beta sandwiches	X: Immunoglobulin-like beta-sandwich	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: V-set_8	ECOD (1.6)
E [auth F]	V-set_8	e6oyhF1	A: beta sandwiches	X: Immunoglobulin-like beta-sandwich	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: V-set_8	ECOD (1.6)
G [auth H]	V-set_8	e6oyhH1	A: beta sandwiches	X: Immunoglobulin-like beta-sandwich	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: V-set_8	ECOD (1.6)
B [auth A]	Glycos_transf_4	e6oyhA1	A: alpha bundles	X: Bacterial cell wall synthesis membrane enzyme MraY-related (From Topology)	H: Bacterial cell wall synthesis membrane enzyme MraY-related (From Topology)	T: Bacterial cell wall synthesis membrane enzyme MraY-related	F: Glycos_transf_4	ECOD (1.6)
D [auth C]	Glycos_transf_4	e6oyhC1	A: alpha bundles	X: Bacterial cell wall synthesis membrane enzyme MraY-related (From Topology)	H: Bacterial cell wall synthesis membrane enzyme MraY-related (From Topology)	T: Bacterial cell wall synthesis membrane enzyme MraY-related	F: Glycos_transf_4	ECOD (1.6)
F [auth B]	Glycos_transf_4	e6oyhB1	A: alpha bundles	X: Bacterial cell wall synthesis membrane enzyme MraY-related (From Topology)	H: Bacterial cell wall synthesis membrane enzyme MraY-related (From Topology)	T: Bacterial cell wall synthesis membrane enzyme MraY-related	F: Glycos_transf_4	ECOD (1.6)
H [auth D]	Glycos_transf_4	e6oyhD1	A: alpha bundles	X: Bacterial cell wall synthesis membrane enzyme MraY-related (From Topology)	H: Bacterial cell wall synthesis membrane enzyme MraY-related (From Topology)	T: Bacterial cell wall synthesis membrane enzyme MraY-related	F: Glycos_transf_4	ECOD (1.6)

SAbDab Antibody Annotation SAbDab Database Homepage

Chain	Chain Class	Chain Subclass	Chain Type	Antigen Name(s)	Provenance Source
A [auth E], C [auth G], E [auth F], G [auth H]	Heavy Chain	IGHV1	-	phospho-n-acetylmuramoyl-pentapeptide-transferase	SAbDab (2024-10-25)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
B [auth A], D [auth C], F [auth B], H [auth D]	PF00953	Glycosyl transferase family 4 (Glycos_transf_4)	Glycosyl transferase family 4	-	Family
B [auth A], D [auth C], F [auth B], H [auth D]	PF10555	Phospho-N-acetylmuramoyl-pentapeptide-transferase signature 1 (MraY_sig1)	Phospho-N-acetylmuramoyl-pentapeptide-transferase signature 1	-	Motif

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A [auth E], C [auth G], E [auth F], G [auth H]	MraYAA nanobody	-	-	-
B [auth A], D [auth C], F [auth B], H [auth D]	Phospho-N-acetylmuramoyl-pentapeptide-transferase	transferase activity phospho-N-acetylmuramoyl-pentapeptide-transferase activity catalytic activity phosphotransferase activity, for other substituted phosphate groups transferase activity, transferring phosphorus-containing groups UDP-N-acetylmuramoyl-L-alanyl-D-glutamyl-meso-2,6-diaminopimelyl-D-alanyl-D-alanine:undecaprenyl-phosphate transferase activity cation binding ion binding binding metal ion binding small molecule binding identical protein binding protein binding	developmental process regulation of biological process regulation of developmental process biological regulation regulation of cell shape cell morphogenesis regulation of cell morphogenesis anatomical structure morphogenesis anatomical structure development regulation of biological quality regulation of anatomical structure morphogenesis cellular process cell division cellular component organization developmental process regulation of biological process regulation of developmental process biological regulation regulation of cell shape cell morphogenesis regulation of cell morphogenesis anatomical structure morphogenesis anatomical structure development regulation of biological quality regulation of anatomical structure morphogenesis cellular process cell division cellular component organization cell wall organization or biogenesis cell wall organization cellular component organization or biogenesis external encapsulating structure organization cellular biosynthetic process cellular metabolic process macromolecule biosynthetic process cellular component biogenesis cell wall biogenesis biosynthetic process cell wall macromolecule biosynthetic process metabolic process macromolecule metabolic process carbohydrate derivative biosynthetic process peptidoglycan-based cell wall biogenesis glycosaminoglycan metabolic process carbohydrate derivative metabolic process peptidoglycan biosynthetic process aminoglycan metabolic process peptidoglycan metabolic process aminoglycan biosynthetic process glycosaminoglycan biosynthetic process	cell periphery plasma membrane membrane cellular anatomical entity

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
B [auth A], D [auth C], F [auth B], H [auth D]	IPR018480	Phospho-N-acetylmuramoyl-pentapeptide transferase, conserved site	Conserved Site
B [auth A], D [auth C], F [auth B], H [auth D]	IPR003524	Phospho-N-acetylmuramoyl-pentapeptide transferase	Family
B [auth A], D [auth C], F [auth B], H [auth D]	IPR000715	Glycosyl transferase, family 4	Family

Membrane Protein Annotation: OPM OPM Database Homepage

Chains	External Link	Type	Class	Superfamily	Family
B [auth A], D [auth C], F [auth B], H [auth D]	OPM	Transmembrane	Alpha-helical polytopic	Glycosyl transferase family 4	Transmembrane glycosyl transferase

Membrane Protein Annotation: PDBTM PDBTM Database Homepage

Chains	External Link	Comment
B [auth A], D [auth C], F [auth B], H [auth D]	PDBTM	Annotated as membrane protein by PDBTM

Membrane Protein Annotation: MemProtMD MemProtMD Database Homepage

Chains	External Link	Comment
B [auth A], D [auth C], F [auth B], H [auth D]	MemProtMD	Annotated as membrane protein by MemProtMD

Membrane Protein Annotation: mpstruc mpstruc Database Homepage

Chains	Resource Link	Group	Subgroup	Protein
B [auth A], D [auth C], F [auth B], H [auth D]	mpstruc	TRANSMEMBRANE PROTEINS: ALPHA-HELICAL	PNPT Superfamily	MraY translocase in complex with carbacaprazamycin

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.