6OTJ
Crystal Structure of Tyrosyl-tRNA synthetase from Neisseria gonorrhoeae with bound L-Tyr
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
B | S4_3 | e6otjB1 | A: a+b two layers | X: beta-Grasp | H: Ubiquitin-related | T: Alpha-L RNA-binding motif | F: S4_3 | ECOD (1.6) |
B | tRNA-synt_1b_1 | e6otjB2 | A: a/b three-layered sandwiches | X: HUP domain-like | H: HUP domains (From Topology) | T: HUP domains | F: tRNA-synt_1b_1 | ECOD (1.6) |
A | S4_3 | e6otjA2 | A: a+b two layers | X: beta-Grasp | H: Ubiquitin-related | T: Alpha-L RNA-binding motif | F: S4_3 | ECOD (1.6) |
A | tRNA-synt_1b_1 | e6otjA1 | A: a/b three-layered sandwiches | X: HUP domain-like | H: HUP domains (From Topology) | T: HUP domains | F: tRNA-synt_1b_1 | ECOD (1.6) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF22421 | Tyrosine--tRNA ligase SYY-like C-terminal domain (SYY_C-terminal) | Tyrosine--tRNA ligase SYY-like C-terminal domain | This entry represents the C-terminal domain of Tyrosine--tRNA ligases which contains the S4 motif that binds RNA [1-5]. | Domain | |
PF00579 | tRNA synthetases class I (W and Y) (tRNA-synt_1b) | tRNA synthetases class I (W and Y) | - | Family |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
IPR002307 | Tyrosine-tRNA ligase | Family | |
IPR024107 | Tyrosine-tRNA ligase, bacterial-type, type 1 | Family | |
IPR002305 | Aminoacyl-tRNA synthetase, class Ic | Family | |
IPR024088 | Tyrosine-tRNA ligase, bacterial-type | Family | |
IPR036986 | RNA-binding S4 domain superfamily | Homologous Superfamily | |
IPR001412 | Aminoacyl-tRNA synthetase, class I, conserved site | Conserved Site | |
IPR014729 | Rossmann-like alpha/beta/alpha sandwich fold | Homologous Superfamily |