6OHY
Chimpanzee SIV Env trimeric ectodomain.
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
A | SCOP2B Superfamily | gp120 core | 8099208 | 3001390 | SCOP2B (2022-06-29) |
C | SCOP2 Family | gp120 core | 8099207 | 4002534 | SCOP2 (2022-06-29) |
C | SCOP2 Superfamily | gp120 core | 8099208 | 3001390 | SCOP2 (2022-06-29) |
E [auth D] | SCOP2B Superfamily | gp120 core | 8099208 | 3001390 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | GP120_2nd | e6ohyA3 | A: beta barrels | X: V1/V2 domain in HIV gp120 (From Topology) | H: V1/V2 domain in HIV gp120 (From Topology) | T: V1/V2 domain in HIV gp120 | F: GP120_2nd | ECOD (1.6) |
A | GP120_3rd | e6ohyA1 | A: a+b two layers | X: Ribosomal protein L31e-like | H: Ribosomal protein L31e/gp120 outer domain (From Topology) | T: Ribosomal protein L31e/gp120 outer domain | F: GP120_3rd | ECOD (1.6) |
A | GP120_1st | e6ohyA2 | A: a+b two layers | X: gp120 inner domain (From Topology) | H: gp120 inner domain (From Topology) | T: gp120 inner domain | F: GP120_1st | ECOD (1.6) |
C | GP120_2nd | e6ohyC3 | A: beta barrels | X: V1/V2 domain in HIV gp120 (From Topology) | H: V1/V2 domain in HIV gp120 (From Topology) | T: V1/V2 domain in HIV gp120 | F: GP120_2nd | ECOD (1.6) |
C | GP120_3rd | e6ohyC1 | A: a+b two layers | X: Ribosomal protein L31e-like | H: Ribosomal protein L31e/gp120 outer domain (From Topology) | T: Ribosomal protein L31e/gp120 outer domain | F: GP120_3rd | ECOD (1.6) |
C | GP120_1st | e6ohyC2 | A: a+b two layers | X: gp120 inner domain (From Topology) | H: gp120 inner domain (From Topology) | T: gp120 inner domain | F: GP120_1st | ECOD (1.6) |
E [auth D] | GP120_2nd | e6ohyD2 | A: beta barrels | X: V1/V2 domain in HIV gp120 (From Topology) | H: V1/V2 domain in HIV gp120 (From Topology) | T: V1/V2 domain in HIV gp120 | F: GP120_2nd | ECOD (1.6) |
E [auth D] | GP120_3rd | e6ohyD3 | A: a+b two layers | X: Ribosomal protein L31e-like | H: Ribosomal protein L31e/gp120 outer domain (From Topology) | T: Ribosomal protein L31e/gp120 outer domain | F: GP120_3rd | ECOD (1.6) |
E [auth D] | GP120_1st | e6ohyD1 | A: a+b two layers | X: gp120 inner domain (From Topology) | H: gp120 inner domain (From Topology) | T: gp120 inner domain | F: GP120_1st | ECOD (1.6) |
B | GP41_1st | e6ohyB1 | A: a+b duplicates or obligate multimers | X: MPER trimer (From Topology) | H: MPER trimer (From Topology) | T: MPER trimer | F: GP41_1st | ECOD (1.6) |
D [auth E] | GP41_1st | e6ohyE1 | A: a+b duplicates or obligate multimers | X: MPER trimer (From Topology) | H: MPER trimer (From Topology) | T: MPER trimer | F: GP41_1st | ECOD (1.6) |
F | GP41_1st | e6ohyF1 | A: a+b duplicates or obligate multimers | X: MPER trimer (From Topology) | H: MPER trimer (From Topology) | T: MPER trimer | F: GP41_1st | ECOD (1.6) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
A, C, E [auth D] | PF00516 | Envelope glycoprotein GP120 (GP120) | Envelope glycoprotein GP120 | - | Family |
B, D [auth E], F | PF00517 | Retroviral envelope protein (GP41) | Retroviral envelope protein | - | Family |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
A, C, E [auth D] | IPR000777 | Human immunodeficiency virus 1, envelope glycoprotein Gp120 | Domain |
A, C, E [auth D] | IPR036377 | Gp120 core superfamily | Homologous Superfamily |
A, C, E [auth D] | IPR000328 | Retroviral envelope protein GP41-like | Domain |
B, D [auth E], F | IPR000777 | Human immunodeficiency virus 1, envelope glycoprotein Gp120 | Domain |
B, D [auth E], F | IPR036377 | Gp120 core superfamily | Homologous Superfamily |
B, D [auth E], F | IPR000328 | Retroviral envelope protein GP41-like | Domain |