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 6ODY | pdb_00006ody

Cryo-EM structure of Helicobacter pylori VacA hexamer

External Resource: Annotation


Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
ASel1e6odyA01 A: alpha arraysX: Rossmann-likeH: Rossmann-relatedT: FAD/NAD(P)-binding domainF: Sel1ECOD (v295.2)

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
A, B, C, D, E
Vacuolating cytotoxin autotransporter- -

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
A, B, C, D, E
IPR006315Outer membrane autotransporter barrel domainDomain
A, B, C, D, E
IPR064010Vacuolating cytotoxin autotransporter VacA, C-terminal domainDomain
A, B, C, D, E
IPR003842Vacuolating cytotoxin, beta-helical domainDomain
A, B, C, D, E
IPR036709Autotransporter beta-domain superfamilyHomologous Superfamily
A, B, C, D, E
IPR005546Autotransporter beta-domainDomain

Membrane Protein Annotation: mpstruc mpstruc Database Homepage

ChainsResource LinkGroupSubgroupProtein
A, B, C, D, E
mpstrucTRANSMEMBRANE PROTEINS: ALPHA-HELICALAdventitious Membrane Proteins: Alpha-helical Pore-forming Toxins.VacA toxin oligomer