Annotations: 6ODI

Structure of CagY from a cryo-EM reconstruction of a T4SS

External Resource: Annotation

Domain Annotation: ECOD Classification
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification
Membrane Protein Annotation: mpstruc

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
N [auth o]	TrbI	e6odio1	A: a/b three-layered sandwiches	X: Ten stranded beta/alpha barrel	H: Ten stranded beta/alpha barrel	T: Ten stranded beta/alpha barrel	F: TrbI	ECOD (v294.1)
M [auth n]	TrbI	e6odin1	A: a/b three-layered sandwiches	X: Ten stranded beta/alpha barrel	H: Ten stranded beta/alpha barrel	T: Ten stranded beta/alpha barrel	F: TrbI	ECOD (v294.1)
L [auth m]	TrbI	e6odim1	A: a/b three-layered sandwiches	X: Ten stranded beta/alpha barrel	H: Ten stranded beta/alpha barrel	T: Ten stranded beta/alpha barrel	F: TrbI	ECOD (v294.1)
K [auth l]	TrbI	e6odil1	A: a/b three-layered sandwiches	X: Ten stranded beta/alpha barrel	H: Ten stranded beta/alpha barrel	T: Ten stranded beta/alpha barrel	F: TrbI	ECOD (v294.1)
J [auth k]	TrbI	e6odik1	A: a/b three-layered sandwiches	X: Ten stranded beta/alpha barrel	H: Ten stranded beta/alpha barrel	T: Ten stranded beta/alpha barrel	F: TrbI	ECOD (v294.1)
I [auth j]	TrbI	e6odij1	A: a/b three-layered sandwiches	X: Ten stranded beta/alpha barrel	H: Ten stranded beta/alpha barrel	T: Ten stranded beta/alpha barrel	F: TrbI	ECOD (v294.1)
H [auth i]	TrbI	e6odii1	A: a/b three-layered sandwiches	X: Ten stranded beta/alpha barrel	H: Ten stranded beta/alpha barrel	T: Ten stranded beta/alpha barrel	F: TrbI	ECOD (v294.1)
G [auth h]	TrbI	e6odih1	A: a/b three-layered sandwiches	X: Ten stranded beta/alpha barrel	H: Ten stranded beta/alpha barrel	T: Ten stranded beta/alpha barrel	F: TrbI	ECOD (v294.1)
F [auth g]	TrbI	e6odig1	A: a/b three-layered sandwiches	X: Ten stranded beta/alpha barrel	H: Ten stranded beta/alpha barrel	T: Ten stranded beta/alpha barrel	F: TrbI	ECOD (v294.1)
E [auth f]	TrbI	e6odif1	A: a/b three-layered sandwiches	X: Ten stranded beta/alpha barrel	H: Ten stranded beta/alpha barrel	T: Ten stranded beta/alpha barrel	F: TrbI	ECOD (v294.1)
D [auth e]	TrbI	e6odie1	A: a/b three-layered sandwiches	X: Ten stranded beta/alpha barrel	H: Ten stranded beta/alpha barrel	T: Ten stranded beta/alpha barrel	F: TrbI	ECOD (v294.1)
C [auth d]	TrbI	e6odid1	A: a/b three-layered sandwiches	X: Ten stranded beta/alpha barrel	H: Ten stranded beta/alpha barrel	T: Ten stranded beta/alpha barrel	F: TrbI	ECOD (v294.1)
B [auth c]	TrbI	e6odic1	A: a/b three-layered sandwiches	X: Ten stranded beta/alpha barrel	H: Ten stranded beta/alpha barrel	T: Ten stranded beta/alpha barrel	F: TrbI	ECOD (v294.1)
A [auth b]		e6odib1	A: a/b three-layered sandwiches	X: Ten stranded beta/alpha barrel	H: Ten stranded beta/alpha barrel	T: Ten stranded beta/alpha barrel	F:	ECOD (v294.1)

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A [auth b], B [auth c], C [auth d], D [auth e], E [auth f], A [auth b], B [auth c], C [auth d], D [auth e], E [auth f], F [auth g], G [auth h], H [auth i], I [auth j], J [auth k], K [auth l], L [auth m], M [auth n], N [auth o]	Type IV secretion system apparatus protein CagY	-	-	cellular anatomical structure membrane

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A [auth b], B [auth c], C [auth d], D [auth e], E [auth f], A [auth b], B [auth c], C [auth d], D [auth e], E [auth f], F [auth g], G [auth h], H [auth i], I [auth j], J [auth k], K [auth l], L [auth m], M [auth n], N [auth o]	IPR010853	DC-EC	Repeat
A [auth b], B [auth c], C [auth d], D [auth e], E [auth f], A [auth b], B [auth c], C [auth d], D [auth e], E [auth f], F [auth g], G [auth h], H [auth i], I [auth j], J [auth k], K [auth l], L [auth m], M [auth n], N [auth o]	IPR029285	CagY type 1 repeat	Repeat
A [auth b], B [auth c], C [auth d], D [auth e], E [auth f], A [auth b], B [auth c], C [auth d], D [auth e], E [auth f], F [auth g], G [auth h], H [auth i], I [auth j], J [auth k], K [auth l], L [auth m], M [auth n], N [auth o]	IPR042217	Type IV secretion system, VirB10/TrbI	Homologous Superfamily
A [auth b], B [auth c], C [auth d], D [auth e], E [auth f], A [auth b], B [auth c], C [auth d], D [auth e], E [auth f], F [auth g], G [auth h], H [auth i], I [auth j], J [auth k], K [auth l], L [auth m], M [auth n], N [auth o]	IPR005498	Type IV secretion system, VirB10/TraB/TrbI	Family

Membrane Protein Annotation: mpstruc mpstruc Database Homepage

Chains	Resource Link	Group	Subgroup	Protein
A [auth b], B [auth c], C [auth d], D [auth e], E [auth f] A [auth b], B [auth c], C [auth d], D [auth e], E [auth f], F [auth g], G [auth h], H [auth i], I [auth j], J [auth k], K [auth l], L [auth m], M [auth n], N [auth o]	mpstruc	TRANSMEMBRANE PROTEINS: BETA-BARREL	Type IV Secretion Systems	Cag type IV secretion system, periplasmic ring complex (PRC)

RCSB PDB is hosted by

RCSB PDB is a member of

RCSB Partners
Nucleic Acid Knowledgebase

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.

6ODI | pdb_00006odi

Structure of CagY from a cryo-EM reconstruction of a T4SS

External Resource: Annotation

Domain Annotation: ECOD Classification ECOD Database Homepage

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

InterPro: Protein Family Classification InterPro Database Homepage

Membrane Protein Annotation: mpstruc mpstruc Database Homepage