6O6Y

Crystal structure of Csm6 in complex with cyclic-tetraadenylates (cA4) by cocrystallization of Csm6 and cA4


Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
AF_UNCLASSIFIEDe6o6yA2 A: alpha bundlesX: Four-helical up-and-down bundleH: HEPNT: HEPN domain in CRISPR-associated protein Csx1F: F_UNCLASSIFIEDECOD (1.6)
APF22230e6o6yA1 A: a/b three-layered sandwichesX: CARF (CRISPR-associated Rossmann fold) domains (From Topology)H: CARF (CRISPR-associated Rossmann fold) domains (From Topology)T: CARF (CRISPR-associated Rossmann fold) domainsF: PF22230ECOD (1.6)
BF_UNCLASSIFIEDe6o6yB2 A: alpha bundlesX: Four-helical up-and-down bundleH: HEPNT: HEPN domain in CRISPR-associated protein Csx1F: F_UNCLASSIFIEDECOD (1.6)
BPF22230e6o6yB1 A: a/b three-layered sandwichesX: CARF (CRISPR-associated Rossmann fold) domains (From Topology)H: CARF (CRISPR-associated Rossmann fold) domains (From Topology)T: CARF (CRISPR-associated Rossmann fold) domainsF: PF22230ECOD (1.6)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
A, B
PF22230CRISPR system endoribonuclease Csx1, CARF domain (Csx1_CARF)CRISPR system endoribonuclease Csx1, CARF domainCRISPR system endoribonuclease Csx1 is a metal-independent, endoribonuclease that acts selectively on ssRNA and cleaves specifically after adenosines, as part of the type III-B CRISP-Cas system and it is homologous to Csm6 [1-3], sharing the same dom ...CRISPR system endoribonuclease Csx1 is a metal-independent, endoribonuclease that acts selectively on ssRNA and cleaves specifically after adenosines, as part of the type III-B CRISP-Cas system and it is homologous to Csm6 [1-3], sharing the same domain domain architecture consisting of a CARF domain at the N-terminal that is relatively well conserved, and a HEPN nuclease domain at the C-terminal. This entry represents the CARF (CRISPR-associated Rossmann fold) domain, which binds and cleaves the cyclic oligoadenylate molecule (cA) that then activates the HEPN domain.
Domain