6O3X
Crystal structure of yeast Nrd1 CID in complex with Sen1 NIM2
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
A | SCOP2B Superfamily | ENTH/VHS domain-like | 8053993 | 3000164 | SCOP2B (2022-06-29) |
B | SCOP2B Superfamily | ENTH/VHS domain-like | 8053993 | 3000164 | SCOP2B (2022-06-29) |
C | SCOP2B Superfamily | ENTH/VHS domain-like | 8053993 | 3000164 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | CTD_bind | e6o3xA1 | A: alpha superhelices | X: Repetitive alpha hairpins | H: ARM repeat (From Topology) | T: ARM repeat | F: CTD_bind | ECOD (1.6) |
B | CTD_bind | e6o3xB1 | A: alpha superhelices | X: Repetitive alpha hairpins | H: ARM repeat (From Topology) | T: ARM repeat | F: CTD_bind | ECOD (1.6) |
C | CTD_bind | e6o3xC1 | A: alpha superhelices | X: Repetitive alpha hairpins | H: ARM repeat (From Topology) | T: ARM repeat | F: CTD_bind | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
---|---|---|---|---|---|---|
A | 1.25.40.90 | Mainly Alpha | Alpha Horseshoe | Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat | CATH (utative) | |
B | 1.25.40.90 | Mainly Alpha | Alpha Horseshoe | Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat | CATH (utative) | |
C | 1.25.40.90 | Mainly Alpha | Alpha Horseshoe | Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat | CATH (utative) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF04818 | CID domain (CID) | CID domain | - | Repeat | |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
IPR048892 | Nrd1/Seb1, domain 2 | Domain | |
IPR034894 | Nrd1/Seb1, RNA recognition motif | Domain | |
IPR008942 | ENTH/VHS | Homologous Superfamily | |
IPR000504 | RNA recognition motif domain | Domain | |
IPR012677 | Nucleotide-binding alpha-beta plait domain superfamily | Homologous Superfamily | |
IPR006569 | CID domain | Domain | |
IPR035979 | RNA-binding domain superfamily | Homologous Superfamily | |
IPR041677 | DNA2/NAM7 helicase, helicase domain | Domain | |
IPR045055 | DNA2/NAM7-like helicase | Family | |
IPR041679 | DNA2/NAM7 helicase-like, C-terminal | Domain | |
IPR024481 | Helicase Sen1, N-terminal | Domain | |
IPR027417 | P-loop containing nucleoside triphosphate hydrolase | Homologous Superfamily | |
IPR044340 | Helicase Sen1, 1B domain | Domain | |
IPR047187 | Upf1-like, C-terminal helicase domain | Domain |