Warning
You are using a web browser that we do not support. Our website will not work properly. Please update to a newer version or download a new web browser, such as Chrome or Firefox.
Contact us
Toggle navigation
RCSB PDB
Deposit
Prepare Data
PDBx/mmCIF file
pdb_extract
SF-Tool
Ligand Expo
MAXIT
Validate Data
Validation Server
Validation API
Information for Journals
Validation Task Forces
Deposit Data
wwPDB OneDep System
PDB-Dev
Help and Resources
Deposit FAQ
Validation FAQ
Tutorials
Annotation Policies
Processing Procedures
PDBx/mmCIF Dictionary
PDBx/mmCIF User Guide
Chemical Component Dictionary
Biologically Interesting Molecule Reference Dictionary (BIRD)
BioSync/Beamlines/Facilities
Related Tools
Search
Advanced Search
Sequence Similarity Search
Structure Similarity Search
Chemical Similarity Search
Chemical Sketch Tool
Browse by Annotations
New Entries
Unreleased Entries
PDB Statistics
Visualize
Mol* (MolStar)
Sequence Annotations Viewer
Genome View
Analyze
Pairwise Structure Alignment
Symmetry Resources in the PDB
Structure Quality
Grouping Structures
PDB Citation MeSH Network Explorer
PDB Statistics
EPPIC Biological Assemblies
External Data and Resources
Integrated Resources
Additional Resources
Download
Coordinates and Experimental Data
Sequences
Ligands
File Download Services
Web Services
Learn
Training Courses
Guide to PDB Data
Molecule of the Month
Educational Resources
Curricula
Browse
News
SciArt Galleries
Irving Geis
David Goodsell
About
Contact Us
About RCSB PDB
Vision and Mission
Citation, Usage, Privacy Policies, Logo
News
PDB History
PDB50
User Community
Publications
RCSB PDB Advisory Committee
Team Members
Diversity, Equity, Inclusion, and Access
Service Status
Documentation
General Help
3D Structures in the Protein Data Bank
Computed Structure Models (CSM)
Search and Browse
Basic Search
Advanced Search
Browse Annotations
Visualize and Analyze
Sequence Viewers
Pairwise Structure Alignment
Exploring a 3D Structure
Grouping Structures
Programmatic Access
Additional Resources
Software Supporters
Deposition Resources
FAQs
Glossary
Careers
COVID-19
222,926
Structures from the PDB
1,068,577
Computed Structure Models (CSM)
Navigation Tabs
Structure Summary
Structure
Annotations
Experiment
Sequence
Genome
Versions
Display Files
FASTA Sequence
mmCIF Format
mmCIF Format (Header)
PDB Format
PDB Format (Header)
Download Files
FASTA Sequence
PDBx/mmCIF Format
PDBx/mmCIF Format (gz)
BinaryCIF Format (gz)
PDB Format
PDB Format (gz)
PDBML/XML Format (gz)
NMR Restraints (Text)
NMR Restraints (Text - gz)
NMR Restraints v2 (Text)
NMR Restraints v2 (Text - gz)
Chemical Shifts (STAR)
Chemical Shifts (STAR - gz)
Combined NMR data (NEF) (gz)
Combined NMR data (NMR-STAR) (gz)
Validation Full PDF
Validation (XML - gz)
Validation (CIF - gz)
Biological Assembly 1 (CIF - gz)
Biological Assembly 1 (PDB - gz)
Data API
6NFW
Potyvirus viral protein genome linked (VPg) emulates the m7G cap to recruit the eukaryotic translation initiation factor eIF4E
External Resource: Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification
Gene Ontology: Gene Product Annotation
Gene Ontology Database Homepage
Chains
Polymer
Molecular Function
Biological Process
Cellular Component
A
VPg
catalytic activity, acting on a nucleic acid
helicase activity
catalytic activity
ATP-dependent activity
5'-3' RNA polymerase activity
catalytic activity, acting on RNA
RNA polymerase activity
transferase activity
RNA-dependent RNA polymerase activity
nucleotidyltransferase activity
transferase activity, transferring phosphorus-containing groups
cysteine-type peptidase activity
peptidase activity
catalytic activity, acting on a protein
catalytic activity, acting on a nucleic acid
helicase activity
catalytic activity
ATP-dependent activity
5'-3' RNA polymerase activity
catalytic activity, acting on RNA
RNA polymerase activity
transferase activity
RNA-dependent RNA polymerase activity
nucleotidyltransferase activity
transferase activity, transferring phosphorus-containing groups
cysteine-type peptidase activity
peptidase activity
catalytic activity, acting on a protein
cysteine-type endopeptidase activity
hydrolase activity
endopeptidase activity
serine hydrolase activity
serine-type peptidase activity
RNA binding
binding
organic cyclic compound binding
nucleic acid binding
adenyl ribonucleotide binding
nucleotide binding
purine ribonucleotide binding
purine ribonucleoside triphosphate binding
nucleoside phosphate binding
ion binding
purine nucleotide binding
anion binding
adenyl nucleotide binding
ATP binding
heterocyclic compound binding
carbohydrate derivative binding
ribonucleotide binding
small molecule binding
hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides
hydrolase activity, acting on acid anhydrides
structural molecule activity
Less
cellular biosynthetic process
cellular metabolic process
RNA metabolic process
viral life cycle
primary metabolic process
nucleobase-containing compound biosynthetic process
macromolecule biosynthetic process
nucleic acid metabolic process
RNA biosynthetic process
nucleobase-containing compound metabolic process
nucleic acid biosynthetic process
viral genome replication
biosynthetic process
viral RNA genome replication
viral process
cellular biosynthetic process
cellular metabolic process
RNA metabolic process
viral life cycle
primary metabolic process
nucleobase-containing compound biosynthetic process
macromolecule biosynthetic process
nucleic acid metabolic process
RNA biosynthetic process
nucleobase-containing compound metabolic process
nucleic acid biosynthetic process
viral genome replication
biosynthetic process
viral RNA genome replication
viral process
metabolic process
cellular process
macromolecule metabolic process
gene expression
DNA-templated transcription
symbiont-mediated perturbation of host defense response
response to host defenses
biological process involved in interspecies interaction between organisms
response to stimulus
response to other organism
response to defenses of other organism
modulation by virus of host process
response to external stimulus
virus-mediated perturbation of host defense response
biological process involved in interaction with host
response to biotic stimulus
biological process involved in symbiotic interaction
modulation by symbiont of host process
response to host
response to external biotic stimulus
modulation of process of another organism
modulation by virus of host cellular process
organonitrogen compound metabolic process
proteolysis
protein metabolic process
Less
host intracellular membrane-bounded organelle
host cellular component
host intracellular part
host cell part
host intracellular region
cellular anatomical entity
host cell nucleus
host intracellular organelle
viral capsid
virion component
helical viral capsid
host cell cytoplasmic vesicle
host cell cytoplasm
host cell cytoplasm part
InterPro: Protein Family Classification
InterPro Database Homepage
Chains
Accession
Name
Type
A
IPR001205
RNA-directed RNA polymerase, C-terminal domain
Domain
A
IPR001456
Helper component proteinase
Family
A
IPR043128
Reverse transcriptase/Diguanylate cyclase domain
Homologous Superfamily
A
IPR002540
Peptidase S30, polyprotein P1, potyvirus
Domain
A
IPR013648
Polyprotein, Potyviridae
Domain
A
IPR001730
Potyvirus NIa protease (NIa-pro) domain
Domain
A
IPR011545
DEAD/DEAH box helicase domain
Domain
A
IPR031159
Helper-component proteinase (HC-Pro) cysteine protease (CPD) domain
Domain
A
IPR027417
P-loop containing nucleoside triphosphate hydrolase
Homologous Superfamily
A
IPR009003
Peptidase S1, PA clan
Homologous Superfamily
A
IPR001650
Helicase, C-terminal domain-like
Domain
A
IPR043502
DNA/RNA polymerase superfamily
Homologous Superfamily
A
IPR014001
Helicase superfamily 1/2, ATP-binding domain
Domain
A
IPR001592
Potyvirus coat protein
Family
A
IPR039560
Potyviral polyprotein protein 3
Domain
A
IPR043504
Peptidase S1, PA clan, chymotrypsin-like fold
Homologous Superfamily
A
IPR007094
RNA-directed RNA polymerase, catalytic domain
Domain
A
IPR042308
Helper-component proteinase (HC-Pro) cysteine protease (CPD) domain superfamily
Homologous Superfamily
About
About Us
Citing Us
Publications
Team
Careers
Usage & Privacy
Help
Contact Us
Documentation
Website FAQ
Glossary
Service Status
RCSB PDB (
citation
) is hosted by
RCSB PDB is a member of the
RCSB Partners
Nucleic Acid Knowledgebase
wwPDB Partners
RCSB PDB
PDBe
PDBj
BMRB
EMDB