6NFT
Structure of USP5 zinc-finger ubiquitin binding domain co-crystallized with (4-oxoquinazolin-3(4H)-yl)acetic acid
External Resource: Annotation
Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage
Chains | Domain Info | Class | Fold | Superfamily | Family | Domain | Species | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | d6nfta_ | Small proteins | RING/U-box | RING/U-box | Zf-UBP | Ubiquitin carboxyl-terminal hydrolase 5, UBP5 | Human (Homo sapiens ) [TaxId: 9606 ], | SCOPe (2.08) |
B | d6nftb_ | Small proteins | RING/U-box | RING/U-box | Zf-UBP | Ubiquitin carboxyl-terminal hydrolase 5, UBP5 | Human (Homo sapiens ) [TaxId: 9606 ], | SCOPe (2.08) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | zf-UBP | e6nftA1 | A: few secondary structure elements | X: RING/U-box-like | H: RING/U-box-like | T: RING/U-box | F: zf-UBP | ECOD (1.6) |
B | zf-UBP | e6nftB1 | A: few secondary structure elements | X: RING/U-box-like | H: RING/U-box-like | T: RING/U-box | F: zf-UBP | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
---|---|---|---|---|---|---|
A | 3.30.40.10 | Alpha Beta | 2-Layer Sandwich | Herpes Virus-1 | Zinc/RING finger domain, C3HC4 (zinc finger) | CATH (4.3.0) |
B | 3.30.40.10 | Alpha Beta | 2-Layer Sandwich | Herpes Virus-1 | Zinc/RING finger domain, C3HC4 (zinc finger) | CATH (4.3.0) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF02148 | Zn-finger in ubiquitin-hydrolases and other protein (zf-UBP) | Zn-finger in ubiquitin-hydrolases and other protein | - | Domain |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
IPR028889 | Ubiquitin specific protease domain | Domain | |
IPR016652 | Ubiquitinyl hydrolase | Family | |
IPR041432 | Ubiquitinyl hydrolase, variant UBP zinc finger | Domain | |
IPR001607 | Zinc finger, UBP-type | Domain | |
IPR018200 | Ubiquitin specific protease, conserved site | Conserved Site | |
IPR038765 | Papain-like cysteine peptidase superfamily | Homologous Superfamily | |
IPR050185 | Ubiquitin carboxyl-terminal hydrolase | Family | |
IPR015940 | Ubiquitin-associated domain | Domain | |
IPR013083 | Zinc finger, RING/FYVE/PHD-type | Homologous Superfamily | |
IPR001394 | Peptidase C19, ubiquitin carboxyl-terminal hydrolase | Domain | |
IPR009060 | UBA-like superfamily | Homologous Superfamily | |
IPR041812 | Ubiquitin carboxyl-terminal hydrolase 5, UBA1 domain | Domain |
Pharos: Disease Associations Pharos Homepage Annotation
Chains | Drug Target   | Associated Disease |
---|---|---|
P45974 | :