6N9A
Crystal Structure of Thermotoga maritima threonylcarbamoyladenosine biosynthesis complex TsaB2D2E2 bound to ATP and carboxy-AMP
Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage
Chains | Domain Info | Class | Fold | Superfamily | Family | Domain | Species | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A [auth B] | d6n9ab2 | Alpha and beta proteins (a/b) | Ribonuclease H-like motif | Actin-like ATPase domain | YeaZ-like | automated matches | (Thermotoga maritima ) [TaxId: 2336 ], | SCOPe (2.08) |
A [auth B] | d6n9ab1 | Alpha and beta proteins (a/b) | Ribonuclease H-like motif | Actin-like ATPase domain | automated matches | automated matches | (Thermotoga maritima ) [TaxId: 2336 ], | SCOPe (2.08) |
A [auth B] | d6n9ab3 | Artifacts | Tags | Tags | Tags | N-terminal Tags | (Thermotoga maritima ) [TaxId: 2336 ], | SCOPe (2.08) |
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
A [auth B] | SCOP2B Superfamily | Actin-like ATPases | 8036627 | 3000092 | SCOP2B (2022-06-29) |
A [auth B] | SCOP2B Superfamily | Actin-like ATPases | 8036629 | 3000092 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A [auth B] | TsaB_1 | e6n9aB1 | A: mixed a+b and a/b | X: Ribonuclease H-like | H: Ribonuclease H-like (From Topology) | T: Ribonuclease H-like | F: TsaB_1 | ECOD (1.6) |
A [auth B] | Peptidase_M22_N_1 | e6n9aB2 | A: mixed a+b and a/b | X: Ribonuclease H-like | H: Ribonuclease H-like (From Topology) | T: Ribonuclease H-like | F: Peptidase_M22_N_1 | ECOD (1.6) |
B [auth D] | Peptidase_M22_N | e6n9aD1 | A: mixed a+b and a/b | X: Ribonuclease H-like | H: Ribonuclease H-like (From Topology) | T: Ribonuclease H-like | F: Peptidase_M22_N | ECOD (1.6) |
B [auth D] | Peptidase_M22_C | e6n9aD2 | A: mixed a+b and a/b | X: Ribonuclease H-like | H: Ribonuclease H-like (From Topology) | T: Ribonuclease H-like | F: Peptidase_M22_C | ECOD (1.6) |
C [auth E] | TsaE | e6n9aE1 | A: a/b three-layered sandwiches | X: P-loop domains-like | H: P-loop domains-related | T: P-loop containing nucleoside triphosphate hydrolases | F: TsaE | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
---|---|---|---|---|---|---|
A [auth B] | 3.30.420.40 | Alpha Beta | 2-Layer Sandwich | Nucleotidyltransferase | domain 5 | CATH (utative) |
A [auth B] | 3.30.420.200 | Alpha Beta | 2-Layer Sandwich | Nucleotidyltransferase | domain 5 | CATH (utative) |
B [auth D] | 3.30.420.40 | Alpha Beta | 2-Layer Sandwich | Nucleotidyltransferase | domain 5 | CATH (utative) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
A [auth B] | PF00814 | tRNA N6-adenosine threonylcarbamoyltransferase (TsaD) | tRNA N6-adenosine threonylcarbamoyltransferase | - | Family |
B [auth D] | PF00814 | tRNA N6-adenosine threonylcarbamoyltransferase (TsaD) | tRNA N6-adenosine threonylcarbamoyltransferase | - | Family |
C [auth E] | PF02367 | Threonylcarbamoyl adenosine biosynthesis protein TsaE (TsaE) | Threonylcarbamoyl adenosine biosynthesis protein TsaE | This family of proteins is involved in the synthesis of threonylcarbamoyl adenosine (t(6)A) [1-2]. | Domain |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
A [auth B] | IPR022496 | tRNA threonylcarbamoyl adenosine modification protein TsaB | Family |
A [auth B] | IPR043129 | ATPase, nucleotide binding domain | Homologous Superfamily |
A [auth B] | IPR000905 | Gcp-like domain | Domain |
B [auth D] | IPR017861 | Kae1/TsaD family | Family |
B [auth D] | IPR022450 | tRNA N6-adenosine threonylcarbamoyltransferase, TsaD | Family |
B [auth D] | IPR043129 | ATPase, nucleotide binding domain | Homologous Superfamily |
B [auth D] | IPR000905 | Gcp-like domain | Domain |
C [auth E] | IPR003442 | tRNA threonylcarbamoyl adenosine modification protein TsaE | Family |
C [auth E] | IPR050981 | tRNA_TsaE/AmgK_kinase | Unknown |
C [auth E] | IPR027417 | P-loop containing nucleoside triphosphate hydrolase | Homologous Superfamily |