6MZM
Human TFIID bound to promoter DNA and TFIIA
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
A | SCOP2B Superfamily | Rap30/74 heterodimerisation domain-like | 8054050 | 3000142 | SCOP2B (2021-05-27) |
C [auth D] | SCOP2B Superfamily | Core histone-like | 8042407 | 3001387 | SCOP2B (2021-05-27) |
D [auth G] | SCOP2B Superfamily | Taf5 N-terminal domain-like | 8034920 | 3001495 | SCOP2B (2021-05-27) |
F [auth I] | SCOP2B Superfamily | Core histone-like | 8081687 | 3001387 | SCOP2B (2021-05-27) |
G [auth J] | SCOP2B Superfamily | Rap30/74 heterodimerisation domain-like | 8054049 | 3000142 | SCOP2B (2021-05-27) |
H [auth K] | SCOP2B Superfamily | Core histone-like | 8053232 | 3001387 | SCOP2B (2021-05-27) |
J [auth O] | SCOP2B Superfamily | Core histone-like | 8053233 | 3001387 | SCOP2B (2021-05-27) |
K [auth R] | SCOP2B Superfamily | Core histone-like | 8042408 | 3001387 | SCOP2B (2021-05-27) |
L [auth T] | SCOP2B Superfamily | TATA-box binding protein-like | 8036293 | 3000705 | SCOP2B (2021-05-27) |
L [auth T] | SCOP2B Superfamily | TATA-box binding protein-like | 8036295 | 3000705 | SCOP2B (2021-05-27) |
O [auth W] | SCOP2B Superfamily | Transcription factor IIA (TFIIA) beta-barrel domain | 8037002 | 3001281 | SCOP2B (2021-05-27) |
O [auth W] | SCOP2B Superfamily | Transcription factor IIA (TFIIA) alpha-helical domain | 8037001 | 3001887 | SCOP2B (2021-05-27) |
P [auth X] | SCOP2B Superfamily | Transcription factor IIA (TFIIA) alpha-helical domain | 8037005 | 3001887 | SCOP2B (2021-05-27) |
P [auth X] | SCOP2B Superfamily | Transcription factor IIA (TFIIA) beta-barrel domain | 8037007 | 3001281 | SCOP2B (2021-05-27) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | PF12157 | e6mzmA1 | A: beta complex topology | X: triple barrel (From Homology) | H: triple barrel | T: TFIID subunits TAF1-TAF7 | F: PF12157 | ECOD (1.6) |
A | PF12157 | e6mzmA2 | A: alpha arrays | X: HTH | H: HTH | T: winged | F: PF12157 | ECOD (1.6) |
B | F_UNCLASSIFIED | e6mzmB3 | A: beta sandwiches | X: Baculovirus p35 protein-related (From Topology) | H: Baculovirus p35 protein-related (From Topology) | T: Baculovirus p35 protein-related | F: F_UNCLASSIFIED | ECOD (1.6) |
B | F_UNCLASSIFIED | e6mzmB2 | A: alpha superhelices | X: Repetitive alpha hairpins | H: ARM repeat (From Topology) | T: ARM repeat | F: F_UNCLASSIFIED | ECOD (1.6) |
B | F_UNCLASSIFIED | e6mzmB1 | A: mixed a+b and a/b | X: Zincin-like | H: Metalloproteases (zincins) catalytic domain (From Topology) | T: Metalloproteases (zincins) catalytic domain | F: F_UNCLASSIFIED | ECOD (1.6) |
F [auth I] | PF02969 | e6mzmI2 | A: alpha arrays | X: Histone-like | H: Histone-related | T: Histone | F: PF02969 | ECOD (1.6) |
F [auth I] | PF07571 | e6mzmI1 | A: alpha superhelices | X: Repetitive alpha hairpins | H: ARM repeat (From Topology) | T: ARM repeat | F: PF07571 | ECOD (1.6) |
G [auth J] | PF04658 | e6mzmJ1 | A: beta complex topology | X: triple barrel (From Homology) | H: triple barrel | T: TFIID subunits TAF1-TAF7 | F: PF04658 | ECOD (1.6) |
J [auth O] | PF03540 | e6mzmO1 | A: alpha arrays | X: Histone-like | H: Histone-related | T: Histone | F: PF03540 | ECOD (1.6) |
K [auth R] | PF03847 | e6mzmR1 | A: alpha arrays | X: Histone-like | H: Histone-related | T: Histone | F: PF03847 | ECOD (1.6) |
L [auth T] | PF00352 | e6mzmT1 | A: a+b two layers | X: TBP-like | H: TATA-box binding protein-like (From Topology) | T: TATA-box binding protein-like | F: PF00352 | ECOD (1.6) |
O [auth W] | PF03153 | e6mzmW1 | A: beta duplicates or obligate multimers | X: Transcription factor IIA (TFIIA), beta-barrel domain (From Topology) | H: Transcription factor IIA (TFIIA), beta-barrel domain (From Topology) | T: Transcription factor IIA (TFIIA), beta-barrel domain | F: PF03153 | ECOD (1.6) |
O [auth W] | PF03153 | e6mzmW2 | A: alpha duplicates or obligate multimers | X: TFIIA, alpha-helical domain (From Topology) | H: TFIIA, alpha-helical domain (From Topology) | T: TFIIA, alpha-helical domain | F: PF03153 | ECOD (1.6) |
P [auth X] | PF02751 | e6mzmX2 | A: beta duplicates or obligate multimers | X: Transcription factor IIA (TFIIA), beta-barrel domain (From Topology) | H: Transcription factor IIA (TFIIA), beta-barrel domain (From Topology) | T: Transcription factor IIA (TFIIA), beta-barrel domain | F: PF02751 | ECOD (1.6) |
P [auth X] | PF02268 | e6mzmX1 | A: alpha duplicates or obligate multimers | X: TFIIA, alpha-helical domain (From Topology) | H: TFIIA, alpha-helical domain (From Topology) | T: TFIIA, alpha-helical domain | F: PF02268 | ECOD (1.6) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF12157 | Protein of unknown function (DUF3591) (DUF3591) | Protein of unknown function (DUF3591) | - | Family | |
D [auth G] | PF00400 | WD domain, G-beta repeat (WD40) | WD domain, G-beta repeat | - | Repeat |
F [auth I] | PF07571 | TAF6 C-terminal HEAT repeat domain (TAF6_C) | TAF6 C-terminal HEAT repeat domain | - | Repeat |
F [auth I] | PF02969 | TATA box binding protein associated factor (TAF) (TAF) | TATA box binding protein associated factor (TAF) | TAF proteins adopt a histone-like fold. | Domain |
G [auth J] | PF04658 | TAFII55 protein conserved region (TAFII55_N) | TAFII55 protein conserved region | - | Family |
H [auth K] | PF07524 | Bromodomain associated (Bromo_TP) | Bromodomain associated | This domain is predicted to bind DNA [1] and is often found associated with Pfam:PF00439 and in transcription factors. It has a histone-like fold. | Domain |
H [auth K] | PF10406 | Transcription factor TFIID complex subunit 8 C-term (TAF8_C) | Transcription factor TFIID complex subunit 8 C-term | This is the C-terminal, Delta, part of the TAF8 protein [1]. The N-terminal is generally the histone fold domain, Bromo_TP (Pfam:PF07524). TAF8 is one of the key subunits of the transcription factor for pol II, TFIID. TAF8 is one of the several gener ... | Domain |
J [auth O] | PF03540 | Transcription initiation factor TFIID 23-30kDa subunit (TFIID_30kDa) | Transcription initiation factor TFIID 23-30kDa subunit | - | Family |
K [auth R] | PF03847 | Transcription initiation factor TFIID subunit A (TFIID_20kDa) | Transcription initiation factor TFIID subunit A | - | Domain |
L [auth T] | PF00352 | Transcription factor TFIID (or TATA-binding protein, TBP) (TBP) | Transcription factor TFIID (or TATA-binding protein, TBP) | - | Domain |
O [auth W] | PF03153 | Transcription factor IIA, alpha/beta subunit (TFIIA) | Transcription factor IIA, alpha/beta subunit | - | Family |
P [auth X] | PF02751 | Transcription initiation factor IIA, gamma subunit (TFIIA_gamma_C) | Transcription initiation factor IIA, gamma subunit | Accurate transcription in vivo requires at least six general transcription initiation factors, in addition to RNA polymerase II. Transcription initiation factor IIA (TFIIA) is a multimeric protein which facilitates the binding of TFIID to the TATA b ... | Domain |
P [auth X] | PF02268 | Transcription initiation factor IIA, gamma subunit, helical domain (TFIIA_gamma_N) | Transcription initiation factor IIA, gamma subunit, helical domain | Accurate transcription in vivo requires at least six general transcription initiation factors, in addition to RNA polymerase II. Transcription initiation factor IIA (TFIIA) is a multimeric protein which facilitates the binding of TFIID to the TATA ... | Domain |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Pharos: Disease Associations Pharos Homepage Annotation
Chains | Drug Target   | Associated Disease |
---|---|---|
Q6P1X5 | : 
| |
C [auth D] | O00268 | : |
D [auth G] | Q15542 | : |
E [auth H] | P49848 | : |
F [auth I] | P49848 | : |
G [auth J] | Q15545 | : |
J [auth O] | Q12962 | : |
K [auth R] | Q16514 | : |
O [auth W] | P52655 | : |
P [auth X] | P52657 | :