6MJP
LptB(E163Q)FGC from Vibrio cholerae
External Resource: Annotation
- Domain Annotation: SCOP/SCOPe Classification
- Domain Annotation: SCOP2 Classification
- Domain Annotation: ECOD Classification
- Domain Annotation: CATH
- Protein Family Annotation
- Gene Ontology: Gene Product Annotation
- InterPro: Protein Family Classification
- Membrane Protein Annotation: OPM
- Membrane Protein Annotation: PDBTM
Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage
Chains | Domain Info | Class | Fold | Superfamily | Family | Domain | Species | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | d6mjpa_ | Alpha and beta proteins (a/b) | P-loop containing nucleoside triphosphate hydrolases | P-loop containing nucleoside triphosphate hydrolases | automated matches | automated matches | (Vibrio cholerae ) [TaxId: 666 ], | SCOPe (2.08) |
B | d6mjpb_ | Alpha and beta proteins (a/b) | P-loop containing nucleoside triphosphate hydrolases | P-loop containing nucleoside triphosphate hydrolases | automated matches | automated matches | (Vibrio cholerae ) [TaxId: 666 ], | SCOPe (2.08) |
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
A | SCOP2 Family | ABC transporter ATPase domain-like | 8098137 | 4003976 | SCOP2 (2022-06-29) |
A | SCOP2 Superfamily | ABC transporter-like P-loop ATPases | 8098138 | 3002020 | SCOP2 (2022-06-29) |
B | SCOP2B Superfamily | ABC transporter-like P-loop ATPases | 8098138 | 3002020 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
D [auth F] | YjgP_YjgQ_2nd | e6mjpF1 | A: beta meanders | X: Periplasmic lipopolysaccharide transport protein LptA (YhbN) (From Topology) | H: Periplasmic lipopolysaccharide transport protein LptA (YhbN) (From Topology) | T: Periplasmic lipopolysaccharide transport protein LptA (YhbN) | F: YjgP_YjgQ_2nd | ECOD (1.6) |
D [auth F] | YjgP_YjgQ_1st | e6mjpF2 | A: alpha bundles | X: Type II ABC exporter transmembrane domain fold | H: Type II ABC exporter transmembrane domain-related | T: ABCG5/ABCG8 transmembrane domain | F: YjgP_YjgQ_1st | ECOD (1.6) |
E [auth G] | UNK_F_TYPE | e6mjpG2 | A: beta meanders | X: Periplasmic lipopolysaccharide transport protein LptA (YhbN) (From Topology) | H: Periplasmic lipopolysaccharide transport protein LptA (YhbN) (From Topology) | T: Periplasmic lipopolysaccharide transport protein LptA (YhbN) | F: UNK_F_TYPE | ECOD (1.6) |
E [auth G] | YjgP_YjgQ_1st | e6mjpG1 | A: alpha bundles | X: Type II ABC exporter transmembrane domain fold | H: Type II ABC exporter transmembrane domain-related | T: ABCG5/ABCG8 transmembrane domain | F: YjgP_YjgQ_1st | ECOD (1.6) |
A | ABC_tran | e6mjpA1 | A: a/b three-layered sandwiches | X: P-loop domains-like | H: P-loop domains-related | T: P-loop containing nucleoside triphosphate hydrolases | F: ABC_tran | ECOD (1.6) |
B | ABC_tran | e6mjpB1 | A: a/b three-layered sandwiches | X: P-loop domains-like | H: P-loop domains-related | T: P-loop containing nucleoside triphosphate hydrolases | F: ABC_tran | ECOD (1.6) |
C | LptC | e6mjpC1 | A: beta meanders | X: Periplasmic lipopolysaccharide transport protein LptA (YhbN) (From Topology) | H: Periplasmic lipopolysaccharide transport protein LptA (YhbN) (From Topology) | T: Periplasmic lipopolysaccharide transport protein LptA (YhbN) | F: LptC | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
---|---|---|---|---|---|---|
A | 3.40.50.300 | Alpha Beta | 3-Layer(aba) Sandwich | Rossmann fold | P-loop containing nucleotide triphosphate hydrolases | CATH (utative) |
B | 3.40.50.300 | Alpha Beta | 3-Layer(aba) Sandwich | Rossmann fold | P-loop containing nucleotide triphosphate hydrolases | CATH (utative) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
D [auth F] | PF03739 | Lipopolysaccharide export system permease LptF/LptG (LptF_LptG) | Lipopolysaccharide export system permease LptF/LptG | - | Family |
E [auth G] | PF03739 | Lipopolysaccharide export system permease LptF/LptG (LptF_LptG) | Lipopolysaccharide export system permease LptF/LptG | - | Family |
PF12399 | Branched-chain amino acid ATP-binding cassette transporter (BCA_ABC_TP_C) | Branched-chain amino acid ATP-binding cassette transporter | This domain family is found in bacteria, archaea and eukaryotes, and is approximately 30 amino acids in length. The family is found in association with Pfam:PF00005. There is a conserved AYLG sequence motif. This family is the C terminal of an ATP de ... | Domain | |
PF00005 | ABC transporter (ABC_tran) | ABC transporter | ABC transporters for a large family of proteins responsible for translocation of a variety of compounds across biological membranes. ABC transporters are the largest family of proteins in many completely sequenced bacteria. ABC transporters are comp ... | Domain | |
PF06835 | Lipopolysaccharide-assembly, LptC-related (LptC) | Lipopolysaccharide-assembly, LptC-related | - | Family |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Membrane Protein Annotation: OPM OPM Database Homepage
Chains | External Link | Type | Class | Superfamily | Family |
---|---|---|---|---|---|
OPM | Transmembrane | Alpha-helical polytopic | ABC transporters | Branched-chain amino acid ABC transporter |
Membrane Protein Annotation: PDBTM PDBTM Database Homepage
Chains | External Link | Comment |
---|---|---|
PDBTM | Annotated as membrane protein by PDBTM |