6MIT
LptBFGC from Enterobacter cloacae
External Resource: Annotation
- Domain Annotation: SCOP2 Classification
- Domain Annotation: ECOD Classification
- Domain Annotation: CATH
- Protein Family Annotation
- Gene Ontology: Gene Product Annotation
- InterPro: Protein Family Classification
- Membrane Protein Annotation: OPM
- Membrane Protein Annotation: PDBTM
- Membrane Protein Annotation: mpstruc
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
A | SCOP2 Family | ABC transporter ATPase domain-like | 8096221 | 4003976 | SCOP2 (2022-06-29) |
A | SCOP2 Superfamily | ABC transporter-like P-loop ATPases | 8096222 | 3002020 | SCOP2 (2022-06-29) |
B | SCOP2B Superfamily | ABC transporter-like P-loop ATPases | 8096222 | 3002020 | SCOP2B (2022-06-29) |
F [auth D] | SCOP2B Superfamily | ABC transporter-like P-loop ATPases | 8096222 | 3002020 | SCOP2B (2022-06-29) |
G [auth E] | SCOP2B Superfamily | ABC transporter-like P-loop ATPases | 8096222 | 3002020 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
C | LptC | e6mitC1 | A: beta meanders | X: Periplasmic lipopolysaccharide transport protein LptA (YhbN) (From Topology) | H: Periplasmic lipopolysaccharide transport protein LptA (YhbN) (From Topology) | T: Periplasmic lipopolysaccharide transport protein LptA (YhbN) | F: LptC | ECOD (1.6) |
E [auth G] | YjgP_YjgQ_2nd | e6mitG2 | A: beta meanders | X: Periplasmic lipopolysaccharide transport protein LptA (YhbN) (From Topology) | H: Periplasmic lipopolysaccharide transport protein LptA (YhbN) (From Topology) | T: Periplasmic lipopolysaccharide transport protein LptA (YhbN) | F: YjgP_YjgQ_2nd | ECOD (1.6) |
E [auth G] | YjgP_YjgQ_1st | e6mitG1 | A: alpha bundles | X: Type II ABC exporter transmembrane domain fold | H: Type II ABC exporter transmembrane domain-related | T: ABCG5/ABCG8 transmembrane domain | F: YjgP_YjgQ_1st | ECOD (1.6) |
J | YjgP_YjgQ_2nd | e6mitJ2 | A: beta meanders | X: Periplasmic lipopolysaccharide transport protein LptA (YhbN) (From Topology) | H: Periplasmic lipopolysaccharide transport protein LptA (YhbN) (From Topology) | T: Periplasmic lipopolysaccharide transport protein LptA (YhbN) | F: YjgP_YjgQ_2nd | ECOD (1.6) |
J | YjgP_YjgQ_1st | e6mitJ1 | A: alpha bundles | X: Type II ABC exporter transmembrane domain fold | H: Type II ABC exporter transmembrane domain-related | T: ABCG5/ABCG8 transmembrane domain | F: YjgP_YjgQ_1st | ECOD (1.6) |
A | ABC_tran | e6mitA1 | A: a/b three-layered sandwiches | X: P-loop domains-like | H: P-loop domains-related | T: P-loop containing nucleoside triphosphate hydrolases | F: ABC_tran | ECOD (1.6) |
B | ABC_tran | e6mitB1 | A: a/b three-layered sandwiches | X: P-loop domains-like | H: P-loop domains-related | T: P-loop containing nucleoside triphosphate hydrolases | F: ABC_tran | ECOD (1.6) |
F [auth D] | ABC_tran | e6mitD1 | A: a/b three-layered sandwiches | X: P-loop domains-like | H: P-loop domains-related | T: P-loop containing nucleoside triphosphate hydrolases | F: ABC_tran | ECOD (1.6) |
G [auth E] | ABC_tran | e6mitE1 | A: a/b three-layered sandwiches | X: P-loop domains-like | H: P-loop domains-related | T: P-loop containing nucleoside triphosphate hydrolases | F: ABC_tran | ECOD (1.6) |
D [auth F] | YjgP_YjgQ_2nd | e6mitF1 | A: beta meanders | X: Periplasmic lipopolysaccharide transport protein LptA (YhbN) (From Topology) | H: Periplasmic lipopolysaccharide transport protein LptA (YhbN) (From Topology) | T: Periplasmic lipopolysaccharide transport protein LptA (YhbN) | F: YjgP_YjgQ_2nd | ECOD (1.6) |
D [auth F] | YjgP_YjgQ_1st | e6mitF2 | A: alpha bundles | X: Type II ABC exporter transmembrane domain fold | H: Type II ABC exporter transmembrane domain-related | T: ABCG5/ABCG8 transmembrane domain | F: YjgP_YjgQ_1st | ECOD (1.6) |
I | YjgP_YjgQ_2nd | e6mitI2 | A: beta meanders | X: Periplasmic lipopolysaccharide transport protein LptA (YhbN) (From Topology) | H: Periplasmic lipopolysaccharide transport protein LptA (YhbN) (From Topology) | T: Periplasmic lipopolysaccharide transport protein LptA (YhbN) | F: YjgP_YjgQ_2nd | ECOD (1.6) |
I | YjgP_YjgQ_1st | e6mitI1 | A: alpha bundles | X: Type II ABC exporter transmembrane domain fold | H: Type II ABC exporter transmembrane domain-related | T: ABCG5/ABCG8 transmembrane domain | F: YjgP_YjgQ_1st | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
---|---|---|---|---|---|---|
A | 3.40.50.300 | Alpha Beta | 3-Layer(aba) Sandwich | Rossmann fold | P-loop containing nucleotide triphosphate hydrolases | CATH (utative) |
B | 3.40.50.300 | Alpha Beta | 3-Layer(aba) Sandwich | Rossmann fold | P-loop containing nucleotide triphosphate hydrolases | CATH (utative) |
F [auth D] | 3.40.50.300 | Alpha Beta | 3-Layer(aba) Sandwich | Rossmann fold | P-loop containing nucleotide triphosphate hydrolases | CATH (utative) |
G [auth E] | 3.40.50.300 | Alpha Beta | 3-Layer(aba) Sandwich | Rossmann fold | P-loop containing nucleotide triphosphate hydrolases | CATH (utative) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF06835 | Lipopolysaccharide-assembly, LptC-related (LptC) | Lipopolysaccharide-assembly, LptC-related | - | Family | |
E [auth G], J | PF03739 | Lipopolysaccharide export system permease LptF/LptG (LptF_LptG) | Lipopolysaccharide export system permease LptF/LptG | - | Family |
A, B, F [auth D], G [auth E] | PF12399 | Branched-chain amino acid ATP-binding cassette transporter (BCA_ABC_TP_C) | Branched-chain amino acid ATP-binding cassette transporter | This domain family is found in bacteria, archaea and eukaryotes, and is approximately 30 amino acids in length. The family is found in association with Pfam:PF00005. There is a conserved AYLG sequence motif. This family is the C terminal of an ATP de ... | Domain |
A, B, F [auth D], G [auth E] | PF00005 | ABC transporter (ABC_tran) | ABC transporter | ABC transporters for a large family of proteins responsible for translocation of a variety of compounds across biological membranes. ABC transporters are the largest family of proteins in many completely sequenced bacteria. ABC transporters are comp ... | Domain |
D [auth F], I | PF03739 | Lipopolysaccharide export system permease LptF/LptG (LptF_LptG) | Lipopolysaccharide export system permease LptF/LptG | - | Family |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Membrane Protein Annotation: OPM OPM Database Homepage
Chains | External Link | Type | Class | Superfamily | Family |
---|---|---|---|---|---|
OPM | Transmembrane | Alpha-helical polytopic | ABC transporters | Branched-chain amino acid ABC transporter |
Membrane Protein Annotation: PDBTM PDBTM Database Homepage
Chains | External Link | Comment |
---|---|---|
PDBTM | Annotated as membrane protein by PDBTM |
Membrane Protein Annotation: mpstruc mpstruc Database Homepage
Chains | Resource Link | Group | Subgroup | Protein |
---|---|---|---|---|
mpstruc | TRANSMEMBRANE PROTEINS: ALPHA-HELICAL | ATP Binding Cassette (ABC) Transporters | Lipopolysaccharide transporter complex LptB2FGC |