6M32
Cryo-EM structure of FMO-RC complex from green sulfur bacteria
External Resource: Annotation
- Domain Annotation: SCOP/SCOPe Classification
- Domain Annotation: SCOP2 Classification
- Domain Annotation: ECOD Classification
- Protein Family Annotation
- Gene Ontology: Gene Product Annotation
- InterPro: Protein Family Classification
- Membrane Protein Annotation: OPM
- Membrane Protein Annotation: PDBTM
- Membrane Protein Annotation: MemProtMD
Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage
Chains | Domain Info | Class | Fold | Superfamily | Family | Domain | Species | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A [auth E] | d6m32e_ | All beta proteins | Bacteriochlorophyll A protein | Bacteriochlorophyll A protein | Bacteriochlorophyll A protein | automated matches | (Chlorobaculum tepidum TLS ) [TaxId: 194439 ], | SCOPe (2.08) |
B [auth F] | d6m32f_ | All beta proteins | Bacteriochlorophyll A protein | Bacteriochlorophyll A protein | Bacteriochlorophyll A protein | automated matches | (Chlorobaculum tepidum TLS ) [TaxId: 194439 ], | SCOPe (2.08) |
C [auth G] | d6m32g_ | All beta proteins | Bacteriochlorophyll A protein | Bacteriochlorophyll A protein | Bacteriochlorophyll A protein | automated matches | (Chlorobaculum tepidum TLS ) [TaxId: 194439 ], | SCOPe (2.08) |
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
A [auth E] | SCOP2B Superfamily | Bacteriochlorophyll A protein | 8043010 | 3001696 | SCOP2B (2022-06-29) |
B [auth F] | SCOP2B Superfamily | Bacteriochlorophyll A protein | 8043010 | 3001696 | SCOP2B (2022-06-29) |
C [auth G] | SCOP2B Superfamily | Bacteriochlorophyll A protein | 8043010 | 3001696 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A [auth E] | BChl_A | e6m32E1 | A: a+b two layers | X: Bacteriochlorophyll A protein (From Topology) | H: Bacteriochlorophyll A protein (From Topology) | T: Bacteriochlorophyll A protein | F: BChl_A | ECOD (1.6) |
B [auth F] | BChl_A | e6m32F1 | A: a+b two layers | X: Bacteriochlorophyll A protein (From Topology) | H: Bacteriochlorophyll A protein (From Topology) | T: Bacteriochlorophyll A protein | F: BChl_A | ECOD (1.6) |
C [auth G] | BChl_A | e6m32G1 | A: a+b two layers | X: Bacteriochlorophyll A protein (From Topology) | H: Bacteriochlorophyll A protein (From Topology) | T: Bacteriochlorophyll A protein | F: BChl_A | ECOD (1.6) |
E [auth B] | Fer4_21_1 | e6m32B1 | A: a+b two layers | X: 4Fe-4S ferredoxin (From Topology) | H: 4Fe-4S ferredoxin (From Topology) | T: 4Fe-4S ferredoxin | F: Fer4_21_1 | ECOD (1.6) |
F [auth A] | PsaA_PsaB_C | e6m32A1 | A: alpha bundles | X: Bacterial photosystem II reaction centre L and M subunits-like (From Topology) | H: Bacterial photosystem II reaction centre L and M subunits-like (From Topology) | T: Bacterial photosystem II reaction centre L and M subunits-like | F: PsaA_PsaB_C | ECOD (1.6) |
F [auth A] | F_UNCLASSIFIED | e6m32A2 | A: alpha bundles | X: Photosystem II antenna protein-like (From Topology) | H: Photosystem II antenna protein-like (From Topology) | T: Photosystem II antenna protein-like | F: F_UNCLASSIFIED | ECOD (1.6) |
G [auth a] | PsaA_PsaB_C | e6m32a1 | A: alpha bundles | X: Bacterial photosystem II reaction centre L and M subunits-like (From Topology) | H: Bacterial photosystem II reaction centre L and M subunits-like (From Topology) | T: Bacterial photosystem II reaction centre L and M subunits-like | F: PsaA_PsaB_C | ECOD (1.6) |
G [auth a] | F_UNCLASSIFIED | e6m32a2 | A: alpha bundles | X: Photosystem II antenna protein-like (From Topology) | H: Photosystem II antenna protein-like (From Topology) | T: Photosystem II antenna protein-like | F: F_UNCLASSIFIED | ECOD (1.6) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
A [auth E], B [auth F], C [auth G] | PF02327 | Bacteriochlorophyll A protein (BChl_A) | Bacteriochlorophyll A protein | Bacteriochlorophyll A protein is involved in the energy transfer system of green photosynthetic bacteria. The protein forms a homotrimer, with each monomer unit containing seven molecules of bacteriochlorophyll A. | Domain |
E [auth B] | PF12838 | 4Fe-4S dicluster domain (Fer4_7) | 4Fe-4S dicluster domain | Superfamily includes proteins containing domains which bind to iron-sulfur clusters. Members include bacterial ferredoxins, various dehydrogenases, and various reductases. Structure of the domain is an alpha-antiparallel beta sandwich. Domain contai ... | Domain |
F [auth A], G [auth a] | PF00223 | Photosystem I psaA/psaB protein (PsaA_PsaB) | Photosystem I psaA/psaB protein | - | Family |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
Chains | Polymer | Molecular Function | Biological Process | Cellular Component |
---|---|---|---|---|
A [auth E], B [auth F], C [auth G] | Bacteriochlorophyll a protein | - | ||
P840 reaction center 17 kDa protein | - | - | ||
E [auth B] | Photosystem P840 reaction center iron-sulfur protein | - | - | |
F [auth A], G [auth a] | Photosystem P840 reaction center, large subunit | - |
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
A [auth E], B [auth F], C [auth G] | IPR036559 | Bacteriochlorophyll A superfamily | Homologous Superfamily |
A [auth E], B [auth F], C [auth G] | IPR003426 | Bacteriochlorophyll A protein | Family |
IPR019608 | Photosystem I P840 reaction centre protein PscD | Family | |
E [auth B] | IPR017900 | 4Fe-4S ferredoxin, iron-sulphur binding, conserved site | Conserved Site |
E [auth B] | IPR017896 | 4Fe-4S ferredoxin-type, iron-sulphur binding domain | Domain |
F [auth A], G [auth a] | IPR036408 | Photosystem I PsaA/PsaB superfamily | Homologous Superfamily |
F [auth A], G [auth a] | IPR001280 | Photosystem I PsaA/PsaB | Family |
Membrane Protein Annotation: OPM OPM Database Homepage
Chains | External Link | Type | Class | Superfamily | Family |
---|---|---|---|---|---|
OPM | Transmembrane | Alpha-helical polytopic | Photosystems | Bacterial photosystems |
Membrane Protein Annotation: PDBTM PDBTM Database Homepage
Chains | External Link | Comment |
---|---|---|
PDBTM | Annotated as membrane protein by PDBTM |
Membrane Protein Annotation: MemProtMD MemProtMD Database Homepage
Chains | External Link | Comment |
---|---|---|
MemProtMD | Annotated as membrane protein by MemProtMD |