6LQB
A third intermediate state of L,D-transpeptidase LdtMt2-ertapenem adduct
Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage
Chains | Domain Info | Class | Fold | Superfamily | Family | Domain | Species | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | d6lqba1 | All beta proteins | Immunoglobulin-like beta-sandwich | E set domains | automated matches | automated matches | (Mycobacterium tuberculosis H37Rv ) [TaxId: 83332 ], | SCOPe (2.08) |
A | d6lqba2 | All beta proteins | L,D-transpeptidase catalytic domain-like | L,D-transpeptidase catalytic domain-like | L,D-transpeptidase catalytic domain-like | automated matches | (Mycobacterium tuberculosis H37Rv ) [TaxId: 83332 ], | SCOPe (2.08) |
B | d6lqbb1 | All beta proteins | Immunoglobulin-like beta-sandwich | E set domains | automated matches | automated matches | (Mycobacterium tuberculosis H37Rv ) [TaxId: 83332 ], | SCOPe (2.08) |
B | d6lqbb2 | All beta proteins | L,D-transpeptidase catalytic domain-like | L,D-transpeptidase catalytic domain-like | L,D-transpeptidase catalytic domain-like | automated matches | (Mycobacterium tuberculosis H37Rv ) [TaxId: 83332 ], | SCOPe (2.08) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | PF17964 | e6lqbA1 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: PF17964 | ECOD (1.6) |
A | PF03734 | e6lqbA2 | A: beta complex topology | X: L,D-transpeptidase catalytic domain-like (From Topology) | H: L,D-transpeptidase catalytic domain-like (From Topology) | T: L,D-transpeptidase catalytic domain-like | F: PF03734 | ECOD (1.6) |
B | PF17964 | e6lqbB2 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: PF17964 | ECOD (1.6) |
B | PF03734 | e6lqbB1 | A: beta complex topology | X: L,D-transpeptidase catalytic domain-like (From Topology) | H: L,D-transpeptidase catalytic domain-like (From Topology) | T: L,D-transpeptidase catalytic domain-like | F: PF03734 | ECOD (1.6) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF03734 | L,D-transpeptidase catalytic domain (YkuD) | L,D-transpeptidase catalytic domain | This family of proteins are found in a range of bacteria. It has been shown that this domain can act as an L,D-transpeptidase that gives rise to an alternative pathway for peptidoglycan cross-linking [1]. This gives bacteria resistance to beta-lacta ... | Domain |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
IPR050979 | Bacterial L,D-transpeptidase | Family | |
IPR041280 | Bacterial Ig domain, transpeptidase-associated | Domain | |
IPR005490 | L,D-transpeptidase catalytic domain | Domain | |
IPR038063 | L,D-transpeptidase catalytic domain-like | Homologous Superfamily |