6LFD
Crystal structure of VMB-1 at pH5.5(Bis-Tris)
External Resource: Annotation
- Domain Annotation: SCOP/SCOPe Classification
- Domain Annotation: SCOP2 Classification
- Domain Annotation: ECOD Classification
- Domain Annotation: CATH
- AMR Gene: CARD Annotation
- AMR Gene Family: CARD Annotation
- Protein Family Annotation
- Gene Ontology: Gene Product Annotation
- InterPro: Protein Family Classification
Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage
Chains | Domain Info | Class | Fold | Superfamily | Family | Domain | Species | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | d6lfda_ | Alpha and beta proteins (a+b) | Metallo-hydrolase/oxidoreductase | Metallo-hydrolase/oxidoreductase | automated matches | automated matches | (Vibrio alginolyticus ) [TaxId: 663 ], | SCOPe (2.08) |
B | d6lfdb_ | Alpha and beta proteins (a+b) | Metallo-hydrolase/oxidoreductase | Metallo-hydrolase/oxidoreductase | automated matches | automated matches | (Vibrio alginolyticus ) [TaxId: 663 ], | SCOPe (2.08) |
C | d6lfdc_ | Alpha and beta proteins (a+b) | Metallo-hydrolase/oxidoreductase | Metallo-hydrolase/oxidoreductase | automated matches | automated matches | (Vibrio alginolyticus ) [TaxId: 663 ], | SCOPe (2.08) |
D | d6lfdd_ | Alpha and beta proteins (a+b) | Metallo-hydrolase/oxidoreductase | Metallo-hydrolase/oxidoreductase | automated matches | automated matches | (Vibrio alginolyticus ) [TaxId: 663 ], | SCOPe (2.08) |
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
A | SCOP2B Superfamily | Metallo-hydrolase/oxidoreductase | 8095421 | 3001057 | SCOP2B (2022-06-29) |
B | SCOP2B Superfamily | Metallo-hydrolase/oxidoreductase | 8095421 | 3001057 | SCOP2B (2022-06-29) |
C | SCOP2B Superfamily | Metallo-hydrolase/oxidoreductase | 8095421 | 3001057 | SCOP2B (2022-06-29) |
D | SCOP2B Superfamily | Metallo-hydrolase/oxidoreductase | 8095421 | 3001057 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | Lactamase_B | e6lfdA1 | A: a+b four layers | X: Metallo-hydrolase/oxidoreductase (From Topology) | H: Metallo-hydrolase/oxidoreductase (From Topology) | T: Metallo-hydrolase/oxidoreductase | F: Lactamase_B | ECOD (1.6) |
B | Lactamase_B | e6lfdB1 | A: a+b four layers | X: Metallo-hydrolase/oxidoreductase (From Topology) | H: Metallo-hydrolase/oxidoreductase (From Topology) | T: Metallo-hydrolase/oxidoreductase | F: Lactamase_B | ECOD (1.6) |
C | Lactamase_B | e6lfdC1 | A: a+b four layers | X: Metallo-hydrolase/oxidoreductase (From Topology) | H: Metallo-hydrolase/oxidoreductase (From Topology) | T: Metallo-hydrolase/oxidoreductase | F: Lactamase_B | ECOD (1.6) |
D | Lactamase_B | e6lfdD1 | A: a+b four layers | X: Metallo-hydrolase/oxidoreductase (From Topology) | H: Metallo-hydrolase/oxidoreductase (From Topology) | T: Metallo-hydrolase/oxidoreductase | F: Lactamase_B | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
---|---|---|---|---|---|---|
A | 3.60.15.10 | Alpha Beta | 4-Layer Sandwich | Metallo-beta-lactamase | Chain A | CATH (utative) |
B | 3.60.15.10 | Alpha Beta | 4-Layer Sandwich | Metallo-beta-lactamase | Chain A | CATH (utative) |
C | 3.60.15.10 | Alpha Beta | 4-Layer Sandwich | Metallo-beta-lactamase | Chain A | CATH (utative) |
D | 3.60.15.10 | Alpha Beta | 4-Layer Sandwich | Metallo-beta-lactamase | Chain A | CATH (utative) |
AMR Gene: CARD Annotation CARD Database Homepage
Chains | Accession | Short Name | Description | Provenance Source (Version) |
---|---|---|---|---|
ARO:3005015 | VMB-1 | Vibrio metallo-B-lactamase 1, also known as VMB-1, is carbapenemase beta-lactamase that is found in plasmid pVB1796 from Vibrio alginolyticus. | CARD (3.2.9) |
AMR Gene Family: CARD Annotation CARD Database Homepage
Chains | Accession | Gene Family | Drug Class | Resistance Machanism | Provenance Source (Version) |
---|---|---|---|---|---|
ARO:3005014 | VMB beta-lactamase | carbapenem, cephalosporin, penam | antibiotic inactivation | CARD (3.2.9) |