6L3X
Discovery of novel peptidomimetic boronate ClpP inhibitors with noncanonical enzyme mechanism as potent virulence blockers in vitro and in vivo
Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
A | SCOP2B Superfamily | ClpP/crotonase | 8099314 | 3000033 | SCOP2B (2022-06-29) |
B | SCOP2B Superfamily | ClpP/crotonase | 8099314 | 3000033 | SCOP2B (2022-06-29) |
C | SCOP2B Superfamily | ClpP/crotonase | 8099314 | 3000033 | SCOP2B (2022-06-29) |
D | SCOP2B Superfamily | ClpP/crotonase | 8099314 | 3000033 | SCOP2B (2022-06-29) |
E | SCOP2B Superfamily | ClpP/crotonase | 8099314 | 3000033 | SCOP2B (2022-06-29) |
F | SCOP2B Superfamily | ClpP/crotonase | 8099314 | 3000033 | SCOP2B (2022-06-29) |
G | SCOP2B Superfamily | ClpP/crotonase | 8099314 | 3000033 | SCOP2B (2022-06-29) |
H | SCOP2B Superfamily | ClpP/crotonase | 8099314 | 3000033 | SCOP2B (2022-06-29) |
I | SCOP2 Family | Clp protease, ClpP subunit | 8099313 | 4003574 | SCOP2 (2022-06-29) |
I | SCOP2 Superfamily | ClpP/crotonase | 8099314 | 3000033 | SCOP2 (2022-06-29) |
J | SCOP2B Superfamily | ClpP/crotonase | 8099314 | 3000033 | SCOP2B (2022-06-29) |
K | SCOP2B Superfamily | ClpP/crotonase | 8099314 | 3000033 | SCOP2B (2022-06-29) |
L | SCOP2B Superfamily | ClpP/crotonase | 8099314 | 3000033 | SCOP2B (2022-06-29) |
M | SCOP2B Superfamily | ClpP/crotonase | 8099314 | 3000033 | SCOP2B (2022-06-29) |
N | SCOP2B Superfamily | ClpP/crotonase | 8099314 | 3000033 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | CLP_protease | e6l3xA1 | A: a/b three-layered sandwiches | X: ClpP/crotonase (From Topology) | H: ClpP/crotonase (From Topology) | T: ClpP/crotonase | F: CLP_protease | ECOD (1.6) |
B | CLP_protease | e6l3xB1 | A: a/b three-layered sandwiches | X: ClpP/crotonase (From Topology) | H: ClpP/crotonase (From Topology) | T: ClpP/crotonase | F: CLP_protease | ECOD (1.6) |
C | CLP_protease | e6l3xC1 | A: a/b three-layered sandwiches | X: ClpP/crotonase (From Topology) | H: ClpP/crotonase (From Topology) | T: ClpP/crotonase | F: CLP_protease | ECOD (1.6) |
D | CLP_protease | e6l3xD1 | A: a/b three-layered sandwiches | X: ClpP/crotonase (From Topology) | H: ClpP/crotonase (From Topology) | T: ClpP/crotonase | F: CLP_protease | ECOD (1.6) |
E | CLP_protease | e6l3xE1 | A: a/b three-layered sandwiches | X: ClpP/crotonase (From Topology) | H: ClpP/crotonase (From Topology) | T: ClpP/crotonase | F: CLP_protease | ECOD (1.6) |
F | CLP_protease | e6l3xF1 | A: a/b three-layered sandwiches | X: ClpP/crotonase (From Topology) | H: ClpP/crotonase (From Topology) | T: ClpP/crotonase | F: CLP_protease | ECOD (1.6) |
G | CLP_protease | e6l3xG1 | A: a/b three-layered sandwiches | X: ClpP/crotonase (From Topology) | H: ClpP/crotonase (From Topology) | T: ClpP/crotonase | F: CLP_protease | ECOD (1.6) |
H | CLP_protease | e6l3xH1 | A: a/b three-layered sandwiches | X: ClpP/crotonase (From Topology) | H: ClpP/crotonase (From Topology) | T: ClpP/crotonase | F: CLP_protease | ECOD (1.6) |
I | CLP_protease | e6l3xI1 | A: a/b three-layered sandwiches | X: ClpP/crotonase (From Topology) | H: ClpP/crotonase (From Topology) | T: ClpP/crotonase | F: CLP_protease | ECOD (1.6) |
J | CLP_protease | e6l3xJ1 | A: a/b three-layered sandwiches | X: ClpP/crotonase (From Topology) | H: ClpP/crotonase (From Topology) | T: ClpP/crotonase | F: CLP_protease | ECOD (1.6) |
K | CLP_protease | e6l3xK1 | A: a/b three-layered sandwiches | X: ClpP/crotonase (From Topology) | H: ClpP/crotonase (From Topology) | T: ClpP/crotonase | F: CLP_protease | ECOD (1.6) |
L | CLP_protease | e6l3xL1 | A: a/b three-layered sandwiches | X: ClpP/crotonase (From Topology) | H: ClpP/crotonase (From Topology) | T: ClpP/crotonase | F: CLP_protease | ECOD (1.6) |
M | CLP_protease | e6l3xM1 | A: a/b three-layered sandwiches | X: ClpP/crotonase (From Topology) | H: ClpP/crotonase (From Topology) | T: ClpP/crotonase | F: CLP_protease | ECOD (1.6) |
N | CLP_protease | e6l3xN1 | A: a/b three-layered sandwiches | X: ClpP/crotonase (From Topology) | H: ClpP/crotonase (From Topology) | T: ClpP/crotonase | F: CLP_protease | ECOD (1.6) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF00574 | Clp protease (CLP_protease) | Clp protease | The Clp protease has an active site catalytic triad. In E. coli Clp protease, ser-111, his-136 and asp-185 form the catalytic triad. Swiss:P48254 has lost all of these active site residues and is therefore inactive. Swiss:P42379 contains two large in ... | Domain |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
Chains | Polymer | Molecular Function | Biological Process | Cellular Component |
---|---|---|---|---|
ATP-dependent Clp protease proteolytic subunit |
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
IPR029045 | ClpP/crotonase-like domain superfamily | Homologous Superfamily | |
IPR001907 | ATP-dependent Clp protease proteolytic subunit | Family | |
IPR018215 | ClpP, Ser active site | Active Site | |
IPR033135 | ClpP, histidine active site | Active Site | |
IPR023562 | Clp protease proteolytic subunit /Translocation-enhancing protein TepA | Family |