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6L1F
Crystal structure of PHF20L1 Tudor1 in complex with K142me1 DNMT1
External Resource: Annotation
Domain Annotation: ECOD Classification
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification
Pharos: Disease Associations
Protein Modification Annotation
Domain Annotation: ECOD Classification
ECOD Database Homepage
Chains
Family Name
Domain Identifier
Architecture
Possible Homology
Homology
Topology
Family
Provenance Source (Version)
B
MBT_1
e6l1fB1
A: beta barrels
X: SH3
H: SH3
T: SH3
F: MBT_1
ECOD (1.6)
Gene Ontology: Gene Product Annotation
Gene Ontology Database Homepage
Chains
Polymer
Molecular Function
Biological Process
Cellular Component
A
the K142me1 DNMT1 peptide
DNA-methyltransferase activity
catalytic activity, acting on DNA
catalytic activity, acting on a nucleic acid
transferase activity, transferring one-carbon groups
transferase activity
methyltransferase activity
catalytic activity
RNA binding
binding
organic cyclic compound binding
nucleic acid binding
protein-containing complex binding
chromatin binding
promoter-specific chromatin binding
DNA-methyltransferase activity
catalytic activity, acting on DNA
catalytic activity, acting on a nucleic acid
transferase activity, transferring one-carbon groups
transferase activity
methyltransferase activity
catalytic activity
RNA binding
binding
organic cyclic compound binding
nucleic acid binding
protein-containing complex binding
chromatin binding
promoter-specific chromatin binding
DNA binding
DNA (cytosine-5-)-methyltransferase activity
S-adenosylmethionine-dependent methyltransferase activity
sequence-specific DNA binding
nucleoside phosphate binding
nucleotide binding
heterocyclic compound binding
methyl-CpG binding
small molecule binding
cation binding
transition metal ion binding
zinc ion binding
ion binding
metal ion binding
Less
regulation of cellular process
cellular biosynthetic process
negative regulation of biological process
negative regulation of gene expression via chromosomal CpG island methylation
negative regulation of cellular metabolic process
protein-DNA complex organization
cellular component organization
chromatin organization
negative regulation of cellular process
chromatin remodeling
cellular component organization or biogenesis
negative regulation of macromolecule metabolic process
regulation of biosynthetic process
regulation of biological process
regulation of cellular process
cellular biosynthetic process
negative regulation of biological process
negative regulation of gene expression via chromosomal CpG island methylation
negative regulation of cellular metabolic process
protein-DNA complex organization
cellular component organization
chromatin organization
negative regulation of cellular process
chromatin remodeling
cellular component organization or biogenesis
negative regulation of macromolecule metabolic process
regulation of biosynthetic process
regulation of biological process
protein-containing complex organization
epigenetic regulation of gene expression
cellular metabolic process
negative regulation of metabolic process
biological regulation
regulation of cellular metabolic process
regulation of macromolecule metabolic process
gene expression
macromolecule biosynthetic process
negative regulation of cellular biosynthetic process
regulation of cellular biosynthetic process
regulation of gene expression
negative regulation of gene expression
biosynthetic process
negative regulation of biosynthetic process
negative regulation of macromolecule biosynthetic process
negative regulation of gene expression, epigenetic
regulation of macromolecule biosynthetic process
metabolic process
cellular process
macromolecule metabolic process
regulation of metabolic process
positive regulation of biological process
positive regulation of cellular metabolic process
positive regulation of macromolecule biosynthetic process
positive regulation of metabolic process
positive regulation of biosynthetic process
positive regulation of macromolecule metabolic process
positive regulation of cellular process
positive regulation of gene expression
positive regulation of cellular biosynthetic process
methylation
regulation of vascular associated smooth muscle cell proliferation
cell population proliferation
positive regulation of vascular associated smooth muscle cell proliferation
regulation of smooth muscle cell proliferation
positive regulation of cell population proliferation
smooth muscle cell proliferation
positive regulation of smooth muscle cell proliferation
regulation of cell population proliferation
muscle cell proliferation
vascular associated smooth muscle cell proliferation
negative regulation of phenotypic switching
multicellular organismal process
smooth muscle cell differentiation
cellular developmental process
regulation of developmental process
regulation of smooth muscle cell differentiation
regulation of cell differentiation
negative regulation of muscle cell differentiation
muscle cell differentiation
muscle structure development
regulation of cell differentiation involved in phenotypic switching
multicellular organism development
vascular associated smooth muscle cell differentiation
cell differentiation involved in phenotypic switching
regulation of vascular associated smooth muscle cell differentiation involved in phenotypic switching
cell differentiation
anatomical structure development
negative regulation of cell differentiation
system development
developmental process
negative regulation of developmental process
vascular associated smooth muscle cell differentiation involved in phenotypic switching
reversible differentiation
negative regulation of vascular associated smooth muscle cell differentiation
regulation of vascular associated smooth muscle cell differentiation
negative regulation of vascular associated smooth muscle cell differentiation involved in phenotypic switching
phenotypic switching
vasculature development
circulatory system development
negative regulation of smooth muscle cell differentiation
regulation of muscle cell differentiation
regulation of phenotypic switching
negative regulation of cell differentiation involved in phenotypic switching
RNA metabolic process
primary metabolic process
nucleobase-containing compound biosynthetic process
nucleic acid metabolic process
RNA biosynthetic process
nucleobase-containing compound metabolic process
DNA-templated transcription
nucleic acid biosynthetic process
DNA methylation-dependent heterochromatin formation
heterochromatin formation
facultative heterochromatin formation
cellular response to bisphenol A
cellular response to stimulus
response to stimulus
cellular response to organic cyclic compound
response to oxygen-containing compound
cellular response to oxygen-containing compound
cellular response to chemical stimulus
response to chemical
response to organic cyclic compound
response to bisphenol A
chromosomal DNA methylation maintenance following DNA replication
epigenetic programming of gene expression
muscle cell apoptotic process
smooth muscle cell apoptotic process
negative regulation of programmed cell death
regulation of apoptotic process
regulation of muscle cell apoptotic process
regulation of programmed cell death
cell death
regulation of smooth muscle cell apoptotic process
negative regulation of vascular associated smooth muscle cell apoptotic process
vascular associated smooth muscle cell apoptotic process
negative regulation of smooth muscle cell apoptotic process
negative regulation of apoptotic process
negative regulation of muscle cell apoptotic process
regulation of vascular associated smooth muscle cell apoptotic process
apoptotic process
programmed cell death
cellular response to acid chemical
cellular response to amino acid stimulus
response to acid chemical
response to amino acid
regulation of primary metabolic process
negative regulation of RNA biosynthetic process
regulation of RNA metabolic process
transcription by RNA polymerase II
negative regulation of nucleobase-containing compound metabolic process
regulation of nucleobase-containing compound metabolic process
regulation of RNA biosynthetic process
regulation of transcription by RNA polymerase II
negative regulation of DNA-templated transcription
negative regulation of transcription by RNA polymerase II
regulation of DNA-templated transcription
negative regulation of RNA metabolic process
Less
membrane-bounded organelle
intracellular anatomical structure
nucleus
membrane-enclosed lumen
intracellular membrane-bounded organelle
cellular anatomical entity
intracellular organelle lumen
intracellular organelle
nucleoplasm
organelle lumen
organelle
nuclear lumen
protein-containing complex
pericentric heterochromatin
membrane-bounded organelle
intracellular anatomical structure
nucleus
membrane-enclosed lumen
intracellular membrane-bounded organelle
cellular anatomical entity
intracellular organelle lumen
intracellular organelle
nucleoplasm
organelle lumen
organelle
nuclear lumen
protein-containing complex
pericentric heterochromatin
protein-DNA complex
chromatin
chromosome
heterochromatin
chromosomal region
intracellular non-membrane-bounded organelle
chromosome, centromeric region
non-membrane-bounded organelle
replication fork
germ cell nucleus
female germ cell nucleus
Less
B
PHD finger protein 20-like protein 1
protein binding
binding
modification-dependent protein binding
methylation-dependent protein binding
cation binding
ion binding
metal ion binding
small molecule binding
catabolic process
negative regulation of biological process
macromolecule catabolic process
negative regulation of protein catabolic process
regulation of primary metabolic process
protein metabolic process
negative regulation of protein metabolic process
negative regulation of macromolecule metabolic process
organonitrogen compound catabolic process
negative regulation of catabolic process
regulation of biological process
organonitrogen compound metabolic process
regulation of protein metabolic process
negative regulation of metabolic process
catabolic process
negative regulation of biological process
macromolecule catabolic process
negative regulation of protein catabolic process
regulation of primary metabolic process
protein metabolic process
negative regulation of protein metabolic process
negative regulation of macromolecule metabolic process
organonitrogen compound catabolic process
negative regulation of catabolic process
regulation of biological process
organonitrogen compound metabolic process
regulation of protein metabolic process
negative regulation of metabolic process
biological regulation
primary metabolic process
protein catabolic process
regulation of macromolecule metabolic process
regulation of catabolic process
metabolic process
macromolecule metabolic process
regulation of metabolic process
regulation of protein catabolic process
regulation of cellular process
cellular biosynthetic process
RNA metabolic process
RNA biosynthetic process
nucleobase-containing compound metabolic process
DNA-templated transcription
nucleic acid biosynthetic process
regulation of RNA metabolic process
transcription by RNA polymerase II
regulation of nucleobase-containing compound metabolic process
regulation of RNA biosynthetic process
regulation of transcription by RNA polymerase II
regulation of biosynthetic process
cellular metabolic process
regulation of cellular metabolic process
nucleobase-containing compound biosynthetic process
gene expression
macromolecule biosynthetic process
nucleic acid metabolic process
regulation of cellular biosynthetic process
regulation of gene expression
biosynthetic process
cellular process
regulation of macromolecule biosynthetic process
regulation of DNA-templated transcription
negative regulation of proteolysis
negative regulation of proteolysis involved in protein catabolic process
proteolysis involved in protein catabolic process
proteasome-mediated ubiquitin-dependent protein catabolic process
regulation of ubiquitin-dependent protein catabolic process
regulation of proteolysis involved in protein catabolic process
regulation of proteolysis
modification-dependent macromolecule catabolic process
proteolysis
negative regulation of ubiquitin-dependent protein catabolic process
negative regulation of proteasomal ubiquitin-dependent protein catabolic process
proteasomal protein catabolic process
regulation of proteasomal ubiquitin-dependent protein catabolic process
modification-dependent protein catabolic process
negative regulation of proteasomal protein catabolic process
regulation of proteasomal protein catabolic process
ubiquitin-dependent protein catabolic process
Less
membrane-bounded organelle
intracellular anatomical structure
nucleus
membrane-enclosed lumen
intracellular membrane-bounded organelle
cellular anatomical entity
intracellular organelle lumen
intracellular organelle
nucleoplasm
organelle lumen
organelle
nuclear lumen
NSL complex
protein-containing complex
membrane-bounded organelle
intracellular anatomical structure
nucleus
membrane-enclosed lumen
intracellular membrane-bounded organelle
cellular anatomical entity
intracellular organelle lumen
intracellular organelle
nucleoplasm
organelle lumen
organelle
nuclear lumen
NSL complex
protein-containing complex
catalytic complex
protein-DNA complex
chromatin
chromosome
transferase complex
histone acetyltransferase complex
acetyltransferase complex
H4 histone acetyltransferase complex
intracellular non-membrane-bounded organelle
protein acetyltransferase complex
intracellular protein-containing complex
non-membrane-bounded organelle
Less
InterPro: Protein Family Classification
InterPro Database Homepage
Chains
Accession
Name
Type
A
IPR001025
Bromo adjacent homology (BAH) domain
Domain
A
IPR018117
DNA methylase, C-5 cytosine-specific, active site
Active Site
A
IPR002857
Zinc finger, CXXC-type
Domain
A
IPR022702
DNA (cytosine-5)-methyltransferase 1, replication foci domain
Domain
A
IPR031303
DNA methylase, C-5 cytosine-specific, conserved site
Conserved Site
A
IPR017198
DNA (cytosine-5)-methyltransferase 1-like
Family
A
IPR029063
S-adenosyl-L-methionine-dependent methyltransferase superfamily
Homologous Superfamily
A
IPR010506
DMAP1-binding domain
Domain
A
IPR043151
Bromo adjacent homology (BAH) domain superfamily
Homologous Superfamily
A
IPR050390
DNA Cytosine-5 Methyltransferase
Family
A
IPR001525
C-5 cytosine methyltransferase
Family
B
IPR047405
PHD finger protein 20-like protein 1, Tudor domain
Domain
B
IPR002999
Tudor domain
Domain
B
IPR013083
Zinc finger, RING/FYVE/PHD-type
Homologous Superfamily
B
IPR014002
Agenet domain, plant type
Domain
B
IPR011011
Zinc finger, FYVE/PHD-type
Homologous Superfamily
B
IPR040477
Lysine-specific demethylase 4-like, Tudor domain
Domain
B
IPR043449
PHD finger protein 20-like
Family
B
IPR019786
Zinc finger, PHD-type, conserved site
Conserved Site
Pharos: Disease Associations
Pharos Homepage Annotation
Chains
Drug Target  
Associated Disease
A
Pharos
: 
P26358
hereditary sensory neuropathy-deafness-dementia syndrome
medulloblastoma
tubular adenocarcinoma
carcinoma
melanotic medulloblastoma
hearing loss disorder
prostate cancer
hereditary sensory and autonomic neuropathy type 4
sarcomatoid carcinoma
breast carcinoma
malignant colon neoplasm
Charcot-Marie-Tooth disease
Clear-cell metastatic renal cell carcinoma
adenocarcinoma
prostate intraepithelial neoplasia
hereditary sensory neuropathy-deafness-dementia syndrome
medulloblastoma
tubular adenocarcinoma
carcinoma
melanotic medulloblastoma
hearing loss disorder
prostate cancer
hereditary sensory and autonomic neuropathy type 4
sarcomatoid carcinoma
breast carcinoma
malignant colon neoplasm
Charcot-Marie-Tooth disease
Clear-cell metastatic renal cell carcinoma
adenocarcinoma
prostate intraepithelial neoplasia
childhood medulloblastoma
medullomyoblastoma with myogenic differentiation
dementia
adult medulloblastoma
granular cell carcinoma
peripheral neuropathy
asthma
autosomal dominant cerebellar ataxia, deafness and narcolepsy
breast cancer
invasive ductal breast carcinoma
lymphoplasmacytic lymphoma
chronic myelomonocytic leukemia
acute myeloid leukemia
cribriform carcinoma
dermatomyositis
myopathy
gastric cancer
pancreatic intraductal papillary-mucinous neoplasm
hereditary sensory and autonomic neuropathy
psoriasis
astrocytic tumor
benign colon neoplasm
ulcerative colitis
juvenile dermatomyositis
cribriform carcinoma of breast
adrenal cortex carcinoma
desmoplastic/nodular medulloblastoma
anxiety disorder
gastric neoplasm
peripheral nervous system disease
hematologic disease
hereditary sensory and autonomic neuropathy type 1
rheumatoid arthritis
hereditary sensory and autonomic neuropathy type 5
schizophrenia
bipolar disorder
sensory peripheral neuropathy
cancer
intellectual disability
undifferentiated carcinoma
Kleine-Levin syndrome
malignant mesothelioma
colonic neoplasm
myelodysplastic syndrome
ovarian cancer
hereditary diffuse gastric adenocarcinoma
hereditary sensory and autonomic neuropathy type 2
Riley-Day syndrome
Less
B
Pharos
: 
A8MW92
psoriasis
tuberculosis
attention deficit hyperactivity disorder, inattentive type
glioblastoma
hyperthyroidism
malignant ependymoma
osteosarcoma
pancreatic intraductal papillary-mucinous neoplasm
progressive supranuclear palsy
rheumatoid arthritis
vitiligo
atypical teratoid rhabdoid tumor
Hashimoto thyroiditis
hypothyroidism
malignant pancreatic neoplasm
psoriasis
tuberculosis
attention deficit hyperactivity disorder, inattentive type
glioblastoma
hyperthyroidism
malignant ependymoma
osteosarcoma
pancreatic intraductal papillary-mucinous neoplasm
progressive supranuclear palsy
rheumatoid arthritis
vitiligo
atypical teratoid rhabdoid tumor
Hashimoto thyroiditis
hypothyroidism
malignant pancreatic neoplasm
ovarian cancer
pancreatic intraductal papillary-mucinous neoplasm with low grade dysplasia
prostate carcinoma
subependymal giant cell astrocytoma
exocrine pancreatic carcinoma
hepatocellular carcinoma
large cell medulloblastoma
medulloblastoma
pancreatic intraductal papillary-mucinous carcinoma
Pick disease
Less
Protein Modification Annotation
Modified Residue(s)
Chain
Residue(s)
Description
A
MLZ
Parent Component:
LYS
RESID
: 
AA0076
PSI-MOD
:  N6-methyl-L-lysine
MOD:00085
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