6KZ7
The crystal structure of BAF155 SWIRM domain and N-terminal elongated hSNF5 RPT1 domain complex: Chromatin remodeling complex
External Resource: Annotation
Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage
Chains | Domain Info | Class | Fold | Superfamily | Family | Domain | Species | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | d6kz7a_ | All alpha proteins | DNA/RNA-binding 3-helical bundle | Homeodomain-like | automated matches | automated matches | Human (Homo sapiens ) [TaxId: 9606 ], | SCOPe (2.08) |
C | d6kz7c1 | All alpha proteins | DNA/RNA-binding 3-helical bundle | Homeodomain-like | automated matches | automated matches | Human (Homo sapiens ) [TaxId: 9606 ], | SCOPe (2.08) |
C | d6kz7c2 | Artifacts | Tags | Tags | Tags | N-terminal Tags | Human (Homo sapiens ) [TaxId: 9606 ], | SCOPe (2.08) |
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
B | SCOP2B Superfamily | PFU(mutate) domain-like | 8055786 | 3002311 | SCOP2B (2022-06-29) |
D | SCOP2B Superfamily | PFU(mutate) domain-like | 8055786 | 3002311 | SCOP2B (2022-06-29) |
A | SCOP2B Superfamily | Homeodomain-like | 8066216 | 3000001 | SCOP2B (2022-06-29) |
C | SCOP2B Superfamily | Homeodomain-like | 8066216 | 3000001 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
B | PF04855 | e6kz7B1 | A: a+b two layers | X: FKBP-like | H: FKBP-like | T: WNK1 autoinhibitory domain | F: PF04855 | ECOD (1.6) |
D | PF04855 | e6kz7D1 | A: a+b two layers | X: FKBP-like | H: FKBP-like | T: WNK1 autoinhibitory domain | F: PF04855 | ECOD (1.6) |
A | PF04433 | e6kz7A1 | A: alpha arrays | X: HTH | H: HTH | T: tri-helical | F: PF04433 | ECOD (1.6) |
C | PF04433 | e6kz7C1 | A: alpha arrays | X: HTH | H: HTH | T: tri-helical | F: PF04433 | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
---|---|---|---|---|---|---|
A | 1.10.10.10 | Mainly Alpha | Orthogonal Bundle | Arc Repressor Mutant, subunit A | Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | CATH (utative) |
C | 1.10.10.10 | Mainly Alpha | Orthogonal Bundle | Arc Repressor Mutant, subunit A | Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | CATH (utative) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF04855 | SNF5 / SMARCB1 / INI1 (SNF5) | SNF5 / SMARCB1 / INI1 | - | Family | |
PF04433 | SWIRM domain (SWIRM) | SWIRM domain | This SWIRM domain is a small alpha-helical domain of about 85 amino acid residues found in chromosomal proteins. It contains a helix-turn helix motif and binds to DNA [1]. | Domain |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
IPR048664 | SWI/SNF Subunit INI1, DNA binding domain | Domain | |
IPR017393 | Chromatin-remodeling complex component Sfh1/SNF5 | Family | |
IPR006939 | SNF5/SMARCB1/INI1 | Family | |
IPR032451 | SMARCC, C-terminal | Domain | |
IPR009057 | Homedomain-like superfamily | Homologous Superfamily | |
IPR032450 | SMARCC, N-terminal | Domain | |
IPR032448 | SMARCC, SWIRM-associated domain | Domain | |
IPR036388 | Winged helix-like DNA-binding domain superfamily | Homologous Superfamily | |
IPR017884 | SANT domain | Domain | |
IPR007526 | SWIRM domain | Domain | |
IPR049898 | MarR-like, BRCT and chromo domains module | Domain | |
IPR036420 | BRCT domain superfamily | Homologous Superfamily | |
IPR000953 | Chromo/chromo shadow domain | Domain | |
IPR001005 | SANT/Myb domain | Domain |