Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
ASCOP2B SuperfamilyCore histone-like 8041272 3001387 SCOP2B (2022-06-29)
ESCOP2B SuperfamilyCore histone-like 8041272 3001387 SCOP2B (2022-06-29)
BSCOP2B SuperfamilyCore histone-like 8042439 3001387 SCOP2B (2022-06-29)
FSCOP2B SuperfamilyCore histone-like 8042439 3001387 SCOP2B (2022-06-29)
CSCOP2B SuperfamilyCore histone-like 8041278 3001387 SCOP2B (2022-06-29)
GSCOP2B SuperfamilyCore histone-like 8041278 3001387 SCOP2B (2022-06-29)
DSCOP2B SuperfamilyCore histone-like 8041279 3001387 SCOP2B (2022-06-29)
HSCOP2B SuperfamilyCore histone-like 8041279 3001387 SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
AHistonee6kiuA1 A: alpha arraysX: Histone-likeH: Histone-relatedT: HistoneF: HistoneECOD (1.6)
EHistonee6kiuE1 A: alpha arraysX: Histone-likeH: Histone-relatedT: HistoneF: HistoneECOD (1.6)
N [auth T]SPRYe6kiuT1 A: beta sandwichesX: jelly-rollH: Concanavalin A-likeT: Concanavalin A-like lectins/glucanasesF: SPRYECOD (1.6)
Oubiquitin_1e6kiuO1 A: a+b two layersX: beta-GraspH: Ubiquitin-relatedT: Ubiquitin-likeF: ubiquitin_1ECOD (1.6)
BHistone_1e6kiuB1 A: alpha arraysX: Histone-likeH: Histone-relatedT: HistoneF: Histone_1ECOD (1.6)
FHistone_1e6kiuF1 A: alpha arraysX: Histone-likeH: Histone-relatedT: HistoneF: Histone_1ECOD (1.6)
CHistone_1e6kiuC1 A: alpha arraysX: Histone-likeH: Histone-relatedT: HistoneF: Histone_1ECOD (1.6)
GHistone_1e6kiuG1 A: alpha arraysX: Histone-likeH: Histone-relatedT: HistoneF: Histone_1ECOD (1.6)
DHistonee6kiuD1 A: alpha arraysX: Histone-likeH: Histone-relatedT: HistoneF: HistoneECOD (1.6)
HHistonee6kiuH1 A: alpha arraysX: Histone-likeH: Histone-relatedT: HistoneF: HistoneECOD (1.6)
KSETe6kiuK1 A: beta barrelsX: beta-clipH: SET domain-like (From Topology)T: SET domain-likeF: SETECOD (1.6)
M [auth R]ANAPC4_WD40_18e6kiuR1 A: beta duplicates or obligate multimersX: beta-propeller-likeH: beta-propellerT: 7-bladedF: ANAPC4_WD40_18ECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
N [auth T]PF00622SPRY domain (SPRY)SPRY domain- Family
PF00240Ubiquitin family (ubiquitin)Ubiquitin familyThis family contains a number of ubiquitin-like proteins: SUMO (smt3 homologue) (see Swiss:Q02724), Nedd8 (see Swiss:P29595), Elongin B (see Swiss:Q15370), Rub1 (see Swiss:Q9SHE7), and Parkin (see Swiss:O60260). A number of them are thought to carry ...This family contains a number of ubiquitin-like proteins: SUMO (smt3 homologue) (see Swiss:Q02724), Nedd8 (see Swiss:P29595), Elongin B (see Swiss:Q15370), Rub1 (see Swiss:Q9SHE7), and Parkin (see Swiss:O60260). A number of them are thought to carry a distinctive five-residue motif termed the proteasome-interacting motif (PIM), which may have a biologically significant role in protein delivery to proteasomes and recruitment of proteasomes to transcription sites [5].
Domain
B, F
PF15511Centromere kinetochore component CENP-T histone fold (CENP-T_C)Centromere kinetochore component CENP-T histone foldCENP-T is a family of vertebral kinetochore proteins that associates directly with CENP-W. The N-terminus of CENP-T proteins interacts directly with the Ndc80 complex in the outer kinetochore. Importantly, the CENP-T-W complex does not directly asso ...CENP-T is a family of vertebral kinetochore proteins that associates directly with CENP-W. The N-terminus of CENP-T proteins interacts directly with the Ndc80 complex in the outer kinetochore. Importantly, the CENP-T-W complex does not directly associate with CENP-A, but with histone H3 in the centromere region. CENP-T and -W form a hetero-tetramer with CENP-S and -X and bind to a ~100 bp region of nucleosome-free DNA forming a nucleosome-like structure. The DNA-CENP-T-W-S-X complex is likely to be associated with histone H3-containing nucleosomes rather than with CENP-nucleosomes. This domain is the C-terminal histone fold domain of CENP-T, which associates with chromatin [2-3].
Domain
C, G
PF16211C-terminus of histone H2A (Histone_H2A_C)C-terminus of histone H2A- Family
PF00856SET domain (SET)SET domain- Family
L [auth N]PF00400WD domain, G-beta repeat (WD40)WD domain, G-beta repeat- Repeat
M [auth R]PF00400WD domain, G-beta repeat (WD40)WD domain, G-beta repeat- Repeat

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
A, E
Histone H3 -
N [auth T]Set1/Ash2 histone methyltransferase complex subunit ASH2
Ubiquitin
B, F
Histone H4
C, G
Histone H2A -
D, H
Histone H2B 1.1 -
DNA (145-MER)---
DNA (145-MER)---
Histone-lysine N-methyltransferase 2A
L [auth N]Retinoblastoma-binding protein 5
M [auth R]WD repeat-containing protein 5

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
A, E
IPR009072Histone-foldHomologous Superfamily
A, E
IPR007125Histone H2A/H2B/H3Domain
A, E
IPR000164Histone H3/CENP-AFamily
N [auth T]IPR053835Set1/Ash2 histone methyltransferase complex subunit ASH2-like, winged-helixDomain
N [auth T]IPR001870B30.2/SPRY domainDomain
N [auth T]IPR013320Concanavalin A-like lectin/glucanase domain superfamilyHomologous Superfamily
N [auth T]IPR043136B30.2/SPRY domain superfamilyHomologous Superfamily
N [auth T]IPR049455Set1/Ash2 histone methyltransferase complex subunit ASH2-like, PHD zinc fingerDomain
N [auth T]IPR037353Histone methyltransferase complex subunit ASH2Family
N [auth T]IPR003877SPRY domainDomain
IPR019954Ubiquitin conserved siteConserved Site
IPR050158Ubiquitin and ubiquitin-likeFamily
IPR011332Zinc-binding ribosomal proteinHomologous Superfamily
IPR000626Ubiquitin-like domainDomain
IPR038582Small ribosomal subunit protein eS31 eukaryotic-type superfamilyHomologous Superfamily
IPR002906Small ribosomal subunit protein eS31Domain
IPR019956Ubiquitin domainDomain
IPR029071Ubiquitin-like domain superfamilyHomologous Superfamily
B, F
IPR009072Histone-foldHomologous Superfamily
B, F
IPR001951Histone H4Family
B, F
IPR035425CENP-T/Histone H4, histone foldDomain
B, F
IPR019809Histone H4, conserved siteConserved Site
B, F
IPR004823TATA box binding protein associated factor (TAF), histone-like fold domainDomain
C, G
IPR009072Histone-foldHomologous Superfamily
C, G
IPR007125Histone H2A/H2B/H3Domain
C, G
IPR002119Histone H2AFamily
C, G
IPR032454Histone H2A, C-terminal domainDomain
C, G
IPR032458Histone H2A conserved siteConserved Site
D, H
IPR009072Histone-foldHomologous Superfamily
D, H
IPR007125Histone H2A/H2B/H3Domain
D, H
IPR000558Histone H2BFamily
IPR001965Zinc finger, PHD-typeDomain
IPR046341SET domain superfamilyHomologous Superfamily
IPR001214SET domainDomain
IPR044133KMT2A, PHD domain 3Domain
IPR003616Post-SET domainDomain
IPR034732Extended PHD (ePHD) domainDomain
IPR013083Zinc finger, RING/FYVE/PHD-typeHomologous Superfamily
IPR036427Bromodomain-like superfamilyHomologous Superfamily
IPR003888FY-rich, N-terminalConserved Site
IPR001487BromodomainDomain
IPR002857Zinc finger, CXXC-typeDomain
IPR019787Zinc finger, PHD-fingerDomain
IPR011011Zinc finger, FYVE/PHD-typeHomologous Superfamily
IPR041958KMT2A, ePHD domainDomain
IPR047219Histone-lysine N-methyltransferase 2A/2B, SET domainDomain
IPR042025KMT2A, PHD domain 2Domain
IPR003889FY-rich, C-terminalConserved Site
IPR016569Methyltransferase, trithoraxFamily
IPR042023KMT2A, PHD domain 1Domain
L [auth N]IPR037850Retinoblastoma-binding protein 5/Swd1Family
L [auth N]IPR001680WD40 repeatRepeat
L [auth N]IPR015943WD40/YVTN repeat-like-containing domain superfamilyHomologous Superfamily
M [auth R]IPR019775WD40 repeat, conserved siteConserved Site
M [auth R]IPR015943WD40/YVTN repeat-like-containing domain superfamilyHomologous Superfamily
M [auth R]IPR036322WD40-repeat-containing domain superfamilyHomologous Superfamily
M [auth R]IPR001680WD40 repeatRepeat
M [auth R]IPR020472G-protein beta WD-40 repeatRepeat

Pharos: Disease Associations Pharos Homepage Annotation

ChainsDrug Target  Associated Disease
N [auth T]PharosQ9UBL3
PharosP62979
PharosQ03164
L [auth N]PharosQ15291
M [auth R]PharosP61964