6KGD
Crystal structure of CaDoc0917(R49D)-CaCohA2 complex at pH 8.0
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
B | SCOP2B Superfamily | Type I dockerin domain | 8100420 | 3001894 | SCOP2B (2021-05-27) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | PF00963 | e6kgdA1 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Common fold of diphtheria toxin/transcription factors/cytochrome f | F: PF00963 | ECOD (1.6) |
B | PF00404 | e6kgdB1 | A: alpha arrays | X: EF-hand | H: EF-hand-related | T: Type I dockerin domain | F: PF00404 | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
---|---|---|---|---|---|---|
B | 1.10.1330.10 | Mainly Alpha | Orthogonal Bundle | Type 1 dockerin domain | Dockerin domain | CATH (utative) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF00963 | Cohesin domain (Cohesin) | Cohesin domain | Cohesin domains interact with a complementary domain, termed the dockerin domain. The cohesin-dockerin interaction is the crucial interaction for complex formation in the cellulosome [1]. | Domain | |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
Chains | Polymer | Molecular Function | Biological Process | Cellular Component |
---|---|---|---|---|
Probably cellulosomal scaffolding protein, secreted cellulose-binding and cohesin domain | - | |||
And cellulose-binding endoglucanase family 9 CelL ortholog dockerin domain | - |
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
IPR006626 | Parallel beta-helix repeat | Repeat | |
IPR036966 | Carbohydrate-binding module 3 superfamily | Homologous Superfamily | |
IPR005102 | Carbohydrate binding X2 domain | Domain | |
IPR013783 | Immunoglobulin-like fold | Homologous Superfamily | |
IPR014756 | Immunoglobulin E-set | Homologous Superfamily | |
IPR001956 | Carbohydrate-binding module 3 | Domain | |
IPR008965 | CBM2/CBM3, carbohydrate-binding domain superfamily | Homologous Superfamily | |
IPR002102 | Cellulosome anchoring protein, cohesin domain | Domain | |
IPR012341 | Six-hairpin glycosidase-like superfamily | Homologous Superfamily | |
IPR002105 | Dockerin type I repeat | Repeat | |
IPR016134 | Dockerin domain | Domain | |
IPR018247 | EF-Hand 1, calcium-binding site | Binding Site | |
IPR008928 | Six-hairpin glycosidase superfamily | Homologous Superfamily | |
IPR001701 | Glycoside hydrolase family 9 | Domain | |
IPR036439 | Dockerin domain superfamily | Homologous Superfamily |