6KBZ
Crystal structure of yedK with ssDNA containing a tetrahydrofuran abasic site
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
C [auth D] | SCOP2B Superfamily | BB1717-like | 8059018 | 3000864 | SCOP2B (2021-05-27) |
E [auth F] | SCOP2B Superfamily | BB1717-like | 8059018 | 3000864 | SCOP2B (2021-05-27) |
G [auth H] | SCOP2B Superfamily | BB1717-like | 8059018 | 3000864 | SCOP2B (2021-05-27) |
A [auth B] | SCOP2B Superfamily | BB1717-like | 8059018 | 3000864 | SCOP2B (2021-05-27) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
C [auth D] | PF02586 | e6kbzD1 | A: a+b complex topology | X: BB1717-like (From Topology) | H: BB1717-like (From Topology) | T: BB1717-like | F: PF02586 | ECOD (1.6) |
E [auth F] | PF02586 | e6kbzF1 | A: a+b complex topology | X: BB1717-like (From Topology) | H: BB1717-like (From Topology) | T: BB1717-like | F: PF02586 | ECOD (1.6) |
G [auth H] | PF02586 | e6kbzH1 | A: a+b complex topology | X: BB1717-like (From Topology) | H: BB1717-like (From Topology) | T: BB1717-like | F: PF02586 | ECOD (1.6) |
A [auth B] | PF02586 | e6kbzB1 | A: a+b complex topology | X: BB1717-like (From Topology) | H: BB1717-like (From Topology) | T: BB1717-like | F: PF02586 | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
---|---|---|---|---|---|---|
C [auth D] | 3.90.1680.10 | Alpha Beta | Alpha-Beta Complex | hypothetical protein yedk fold | SOS response associated peptidase-like | CATH (utative) |
E [auth F] | 3.90.1680.10 | Alpha Beta | Alpha-Beta Complex | hypothetical protein yedk fold | SOS response associated peptidase-like | CATH (utative) |
G [auth H] | 3.90.1680.10 | Alpha Beta | Alpha-Beta Complex | hypothetical protein yedk fold | SOS response associated peptidase-like | CATH (utative) |
A [auth B] | 3.90.1680.10 | Alpha Beta | Alpha-Beta Complex | hypothetical protein yedk fold | SOS response associated peptidase-like | CATH (utative) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
A [auth B], C [auth D], E [auth F], G [auth H] | PF02586 | SOS response associated peptidase (SRAP) (SRAP) | SOS response associated peptidase (SRAP) | - | Family |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
Chains | Polymer | Molecular Function | Biological Process | Cellular Component |
---|---|---|---|---|
A [auth B], C [auth D], E [auth F], G [auth H] | SOS response-associated protein | - | ||
B [auth A], D [auth C], F [auth E], H [auth G] | 5'-D (*CP*GP*GP*TP* (3DR) P*GP*AP*TP*TP*C)-3' | - | - | - |
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
A [auth B], C [auth D], E [auth F], G [auth H] | IPR003738 | SOS response associated peptidase (SRAP) | Family |
A [auth B], C [auth D], E [auth F], G [auth H] | IPR036590 | SOS response associated peptidase-like | Homologous Superfamily |