6K06

Crystal structure of Importin-alpha and phosphomimetic GM130

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification
Pharos: Disease Associations

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
B [auth C]	d6k06c_	All alpha proteins	alpha-alpha superhelix	ARM repeat	Armadillo repeat	Importin alpha	Mouse (Mus musculus ) [TaxId: 10090 ],	SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
B [auth C]	SCOP2B Superfamily	ARM repeat-like	8039556	3000116	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
B [auth C]	Arm	e6k06C1	A: alpha superhelices	X: Repetitive alpha hairpins	H: ARM repeat (From Topology)	T: ARM repeat	F: Arm	ECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
B [auth C]	1.25.10.10	Mainly Alpha	Alpha Horseshoe	Leucine-rich Repeat Variant	Leucine-rich Repeat Variant	CATH (utative)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
B [auth C]	PF00514	Armadillo/beta-catenin-like repeat (Arm)	Armadillo/beta-catenin-like repeat	-	Repeat
B [auth C]	PF16186	Atypical Arm repeat (Arm_3)	Atypical Arm repeat	-	Repeat

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A	Peptide from Golgin subfamily A member 2	protein binding binding SNARE binding syntaxin binding cytoskeletal protein binding microtubule binding tubulin binding kinase binding enzyme binding protein kinase binding cell adhesion molecule binding cadherin binding importin-alpha family protein binding identical protein binding	cellular component disassembly Golgi inheritance organelle inheritance Golgi disassembly cellular component organization organelle organization organelle disassembly cellular process cellular component organization or biogenesis Golgi organization endomembrane system organization regulation of protein binding regulation of molecular function negative regulation of protein binding cellular component disassembly Golgi inheritance organelle inheritance Golgi disassembly cellular component organization organelle organization organelle disassembly cellular process cellular component organization or biogenesis Golgi organization endomembrane system organization regulation of protein binding regulation of molecular function negative regulation of protein binding negative regulation of binding regulation of binding biological regulation negative regulation of molecular function cell division asymmetric cell division protein localization establishment of protein localization cellular localization nitrogen compound transport transport establishment of localization localization protein transport cellular macromolecule localization macromolecule localization protein-containing complex organization protein homotetramerization cellular component biogenesis cellular component assembly protein complex oligomerization protein tetramerization protein-containing complex assembly protein homooligomerization establishment of localization in cell intracellular transport endoplasmic reticulum to Golgi vesicle-mediated transport Golgi vesicle transport vesicle-mediated transport meiotic chromosome segregation sexual reproduction non-membrane-bounded organelle assembly reproductive process microtubule cytoskeleton organization meiotic cell cycle process meiotic nuclear division cell cycle chromosome segregation spindle organization cell cycle process organelle assembly meiotic cell cycle organelle fission meiotic spindle organization meiotic spindle assembly spindle assembly nuclear division nuclear chromosome segregation microtubule-based process cytoskeleton organization carbohydrate derivative biosynthetic process cellular biosynthetic process cellular metabolic process glycoprotein biosynthetic process carbohydrate derivative metabolic process primary metabolic process glycoprotein metabolic process protein glycosylation macromolecule biosynthetic process biosynthetic process glycosylation macromolecule modification macromolecule glycosylation metabolic process protein metabolic process macromolecule metabolic process protein modification process microtubule organizing center organization centrosome cycle negative regulation of cellular catabolic process negative regulation of catabolic process regulation of biological process catabolic process regulation of cellular process negative regulation of metabolic process autophagy negative regulation of biological process regulation of cellular metabolic process regulation of catabolic process regulation of autophagy negative regulation of cellular metabolic process cellular catabolic process negative regulation of autophagy regulation of cellular catabolic process negative regulation of cellular process process utilizing autophagic mechanism regulation of metabolic process regulation of protein modification process positive regulation of glycoprotein metabolic process positive regulation of protein metabolic process positive regulation of biological process positive regulation of cellular metabolic process positive regulation of macromolecule biosynthetic process positive regulation of protein glycosylation regulation of primary metabolic process positive regulation of metabolic process positive regulation of protein modification process positive regulation of biosynthetic process positive regulation of macromolecule metabolic process regulation of glycoprotein biosynthetic process positive regulation of cellular process positive regulation of glycoprotein biosynthetic process regulation of biosynthetic process regulation of protein metabolic process regulation of macromolecule metabolic process regulation of glycoprotein metabolic process regulation of cellular biosynthetic process regulation of protein glycosylation regulation of macromolecule biosynthetic process positive regulation of cellular biosynthetic process mitotic cell cycle mitotic sister chromatid segregation microtubule cytoskeleton organization involved in mitosis mitotic nuclear division chromosome organization sister chromatid segregation mitotic spindle organization mitotic spindle assembly mitotic cell cycle process Golgi ribbon formation protein polymerization microtubule polymerization microtubule polymerization or depolymerization microtubule nucleation supramolecular fiber organization	membrane-bounded organelle intracellular organelle intracellular anatomical structure Golgi apparatus cis-Golgi network organelle intracellular membrane-bounded organelle cellular anatomical entity cytoplasm endomembrane system cytoskeleton spindle intracellular non-membrane-bounded organelle spindle pole membrane-bounded organelle intracellular organelle intracellular anatomical structure Golgi apparatus cis-Golgi network organelle intracellular membrane-bounded organelle cellular anatomical entity cytoplasm endomembrane system cytoskeleton spindle intracellular non-membrane-bounded organelle spindle pole microtubule cytoskeleton non-membrane-bounded organelle Golgi cisterna membrane Golgi apparatus subcompartment organelle subcompartment membrane Golgi cisterna Golgi stack organelle membrane intracellular vesicle COPII-coated ER to Golgi transport vesicle cytoplasmic vesicle coated vesicle vesicle mitotic spindle Golgi cis cisterna Golgi membrane bounding membrane of organelle endoplasmic reticulum-Golgi intermediate compartment membrane endoplasmic reticulum-Golgi intermediate compartment polymeric cytoskeletal fiber supramolecular fiber microtubule supramolecular polymer supramolecular complex
B [auth C]	Importin subunit alpha-1	transcription factor binding protein binding binding DNA-binding transcription factor binding nuclear import signal receptor activity nucleocytoplasmic carrier activity molecular carrier activity nuclear localization sequence binding signal sequence binding peptide binding	regulation of biological process regulation of viral process regulation of viral life cycle positive regulation of viral life cycle positive regulation of viral process viral process biological regulation positive regulation of biological process viral life cycle protein localization establishment of protein localization cellular localization NLS-bearing protein import into nucleus nitrogen compound transport regulation of biological process regulation of viral process regulation of viral life cycle positive regulation of viral life cycle positive regulation of viral process viral process biological regulation positive regulation of biological process viral life cycle protein localization establishment of protein localization cellular localization NLS-bearing protein import into nucleus nitrogen compound transport nucleocytoplasmic transport transport nuclear transport intracellular transport protein localization to nucleus establishment of localization localization import into nucleus establishment of protein localization to organelle protein transport cellular macromolecule localization macromolecule localization protein localization to organelle establishment of localization in cell protein import into nucleus cellular process intracellular protein transport cellular response to stimulus regulation of cellular process response to stimulus signaling cell-cell signaling postsynaptic signal transduction cell communication synaptic signaling postsynapse to nucleus signaling pathway signal transduction viral penetration into host nucleus entry of viral genome into host nucleus through nuclear pore complex via importin intracellular transport of virus transport of virus	host cellular component host cell cellular anatomical entity intracellular anatomical structure cytoplasmic ribonucleoprotein granule ribonucleoprotein granule intracellular organelle organelle intracellular non-membrane-bounded organelle cytoplasm supramolecular complex non-membrane-bounded organelle cytoplasmic stress granule protein-containing complex host cellular component host cell cellular anatomical entity intracellular anatomical structure cytoplasmic ribonucleoprotein granule ribonucleoprotein granule intracellular organelle organelle intracellular non-membrane-bounded organelle cytoplasm supramolecular complex non-membrane-bounded organelle cytoplasmic stress granule protein-containing complex nucleocytoplasmic transport complex NLS-dependent protein nuclear import complex cytosol postsynaptic density postsynapse neuron to neuron synapse postsynaptic specialization synapse cell junction asymmetric synapse membrane-bounded organelle nucleus membrane-enclosed lumen intracellular membrane-bounded organelle intracellular organelle lumen nucleoplasm organelle lumen nuclear lumen glutamatergic synapse

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A	IPR024858	Golgin subfamily A	Family
A	IPR043937	Golgin subfamily A member 2, C-terminal binding motif	Conserved Site
A	IPR043976	Golgin subfamily A, conserved domain	Domain
B [auth C]	IPR002652	Importin-alpha, importin-beta-binding domain	Domain
B [auth C]	IPR016024	Armadillo-type fold	Homologous Superfamily
B [auth C]	IPR000225	Armadillo	Repeat
B [auth C]	IPR011989	Armadillo-like helical	Homologous Superfamily
B [auth C]	IPR024931	Importin subunit alpha	Family
B [auth C]	IPR036975	Importin-alpha, importin-beta-binding domain superfamily	Homologous Superfamily
B [auth C]	IPR032413	Atypical Arm repeat	Repeat

Pharos: Disease Associations Pharos Homepage Annotation

Chains	Drug Target	Associated Disease
A	Pharos: Q08379	atypical teratoid rhabdoid tumor glioblastoma psoriasis

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.