6JMP
Crystal Structure of a Non-hemolytic Pneumolysin from Streptococcus pneumoniae strain ST306
Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage
Chains | Domain Info | Class | Fold | Superfamily | Family | Domain | Species | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | d6jmpa_ | Membrane and cell surface proteins and peptides | Perfringolysin N-terminal-like | Perfringolysin N-terminal-like | Perfringolysin N-terminal-like | Pneumolysin N-terminal domain | (Streptococcus pneumoniae ) [TaxId: 1313 ], | SCOPe (2.08) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | Thiol_cytolys_C | e6jmpA2 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Perfringolysin O beta sandwich domain (From Topology) | T: Perfringolysin O beta sandwich domain | F: Thiol_cytolys_C | ECOD (1.6) |
A | Thiol_cytolysin | e6jmpA1 | A: beta complex topology | X: Membrane attack complex/perforin (MACPF) and cholesterol-dependent cytolysin (CDC) domains (From Topology) | H: Membrane attack complex/perforin (MACPF) and cholesterol-dependent cytolysin (CDC) domains (From Topology) | T: Membrane attack complex/perforin (MACPF) and cholesterol-dependent cytolysin (CDC) domains | F: Thiol_cytolysin | ECOD (1.6) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF17440 | Thiol-activated cytolysin beta sandwich domain (Thiol_cytolys_C) | Thiol-activated cytolysin beta sandwich domain | This domain has an immunoglobulin like fold. It is found at the C-terminus of the thiol-activated cytolsin protein. | Domain | |
PF01289 | Thiol-activated cytolysin (Thiol_cytolysin) | Thiol-activated cytolysin | - | Family |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
Chains | Polymer | Molecular Function | Biological Process | Cellular Component |
---|---|---|---|---|
Thiol-activated cytolysin |
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
IPR038700 | Thiol-activated cytolysin, C-terminal domain superfamily | Homologous Superfamily | |
IPR036359 | Thiol-activated cytolysin superfamily | Homologous Superfamily | |
IPR035390 | Thiol-activated cytolysin C-terminal | Domain | |
IPR001869 | Thiol-activated cytolysin | Family | |
IPR036363 | Thiol-activated cytolysin, alpha-beta domain superfamily | Homologous Superfamily |
Membrane Protein Annotation: OPM OPM Database Homepage
Chains | External Link | Type | Class | Superfamily | Family |
---|---|---|---|---|---|
OPM | Monotopic/peripheral | All beta monotopic/peripheral | Cholesterol-dependent cytolysin | Thiol-activated cytolysin |