6JIX
The cyrstal structure of taurine:2-oxoglutarate aminotransferase from Bifidobacterium kashiwanohense, in complex with PLP and glutamate
Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage
Chains | Domain Info | Class | Fold | Superfamily | Family | Domain | Species | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A [auth B] | d6jixb_ | Alpha and beta proteins (a/b) | PLP-dependent transferase-like | PLP-dependent transferases | automated matches | automated matches | (Bifidobacterium catenulatum PV20-2 ) [TaxId: 1447716 ], | SCOPe (2.08) |
B [auth A] | d6jixa_ | Alpha and beta proteins (a/b) | PLP-dependent transferase-like | PLP-dependent transferases | automated matches | automated matches | (Bifidobacterium catenulatum PV20-2 ) [TaxId: 1447716 ], | SCOPe (2.08) |
C | d6jixc_ | Alpha and beta proteins (a/b) | PLP-dependent transferase-like | PLP-dependent transferases | automated matches | automated matches | (Bifidobacterium catenulatum PV20-2 ) [TaxId: 1447716 ], | SCOPe (2.08) |
D | d6jixd_ | Alpha and beta proteins (a/b) | PLP-dependent transferase-like | PLP-dependent transferases | automated matches | automated matches | (Bifidobacterium catenulatum PV20-2 ) [TaxId: 1447716 ], | SCOPe (2.08) |
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
A [auth B] | SCOP2B Superfamily | PLP-dependent transferases | 8096140 | 3000954 | SCOP2B (2022-06-29) |
B [auth A] | SCOP2 Family | GABA-aminotransferase-like | 8096139 | 4000675 | SCOP2 (2022-06-29) |
B [auth A] | SCOP2 Superfamily | PLP-dependent transferases | 8096140 | 3000954 | SCOP2 (2022-06-29) |
C | SCOP2B Superfamily | PLP-dependent transferases | 8096140 | 3000954 | SCOP2B (2022-06-29) |
D | SCOP2B Superfamily | PLP-dependent transferases | 8096140 | 3000954 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A [auth B] | Aminotran_3_C | e6jixB2 | A: a+b two layers | X: C-terminal domain in some PLP-dependent transferases (From Topology) | H: C-terminal domain in some PLP-dependent transferases (From Topology) | T: C-terminal domain in some PLP-dependent transferases | F: Aminotran_3_C | ECOD (1.6) |
A [auth B] | Aminotran_3_N | e6jixB1 | A: a/b three-layered sandwiches | X: PLP-dependent transferases (From Topology) | H: PLP-dependent transferases (From Topology) | T: PLP-dependent transferases | F: Aminotran_3_N | ECOD (1.6) |
B [auth A] | Aminotran_3_C | e6jixA1 | A: a+b two layers | X: C-terminal domain in some PLP-dependent transferases (From Topology) | H: C-terminal domain in some PLP-dependent transferases (From Topology) | T: C-terminal domain in some PLP-dependent transferases | F: Aminotran_3_C | ECOD (1.6) |
B [auth A] | Aminotran_3_N | e6jixA2 | A: a/b three-layered sandwiches | X: PLP-dependent transferases (From Topology) | H: PLP-dependent transferases (From Topology) | T: PLP-dependent transferases | F: Aminotran_3_N | ECOD (1.6) |
C | Aminotran_3_C | e6jixC1 | A: a+b two layers | X: C-terminal domain in some PLP-dependent transferases (From Topology) | H: C-terminal domain in some PLP-dependent transferases (From Topology) | T: C-terminal domain in some PLP-dependent transferases | F: Aminotran_3_C | ECOD (1.6) |
C | Aminotran_3_N | e6jixC2 | A: a/b three-layered sandwiches | X: PLP-dependent transferases (From Topology) | H: PLP-dependent transferases (From Topology) | T: PLP-dependent transferases | F: Aminotran_3_N | ECOD (1.6) |
D | Aminotran_3_C | e6jixD2 | A: a+b two layers | X: C-terminal domain in some PLP-dependent transferases (From Topology) | H: C-terminal domain in some PLP-dependent transferases (From Topology) | T: C-terminal domain in some PLP-dependent transferases | F: Aminotran_3_C | ECOD (1.6) |
D | Aminotran_3_N | e6jixD1 | A: a/b three-layered sandwiches | X: PLP-dependent transferases (From Topology) | H: PLP-dependent transferases (From Topology) | T: PLP-dependent transferases | F: Aminotran_3_N | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
---|---|---|---|---|---|---|
A [auth B] | 3.40.640.10 | Alpha Beta | 3-Layer(aba) Sandwich | Aspartate Aminotransferase | domain 2 | CATH (utative) |
B [auth A] | 3.40.640.10 | Alpha Beta | 3-Layer(aba) Sandwich | Aspartate Aminotransferase | domain 2 | CATH (utative) |
C | 3.40.640.10 | Alpha Beta | 3-Layer(aba) Sandwich | Aspartate Aminotransferase | domain 2 | CATH (utative) |
D | 3.40.640.10 | Alpha Beta | 3-Layer(aba) Sandwich | Aspartate Aminotransferase | domain 2 | CATH (utative) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
A [auth B], B [auth A], C, D | PF00202 | Aminotransferase class-III (Aminotran_3) | Aminotransferase class-III | - | Domain |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
Chains | Polymer | Molecular Function | Biological Process | Cellular Component |
---|---|---|---|---|
A [auth B], B [auth A], C, D | taurine:2-oxoglutarate aminotransferase | - |
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
A [auth B], B [auth A], C, D | IPR049704 | Aminotransferases class-III pyridoxal-phosphate attachment site | Conserved Site |
A [auth B], B [auth A], C, D | IPR015424 | Pyridoxal phosphate-dependent transferase | Homologous Superfamily |
A [auth B], B [auth A], C, D | IPR005814 | Aminotransferase class-III | Family |
A [auth B], B [auth A], C, D | IPR015421 | Pyridoxal phosphate-dependent transferase, major domain | Homologous Superfamily |
A [auth B], B [auth A], C, D | IPR015422 | Pyridoxal phosphate-dependent transferase, small domain | Homologous Superfamily |