Cryo-EM structure of the mammalian DP-state ATP synthase
External Resource: Annotation
- Domain Annotation: SCOP2 Classification
- Domain Annotation: ECOD Classification
- Domain Annotation: CATH
- Protein Family Annotation
- Gene Ontology: Gene Product Annotation
- InterPro: Protein Family Classification
- Membrane Protein Annotation: OPM
- Membrane Protein Annotation: PDBTM
- Membrane Protein Annotation: mpstruc
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
| Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
|---|---|---|---|---|---|
| J [auth I] | SCOP2 Family | epsilon subunit of mitochondrial f1f0-atp synthase | 8094376 | 4001544 | SCOP2 (2022-06-29) |
| J [auth I] | SCOP2 Superfamily | epsilon subunit of mitochondrial F1F0-ATP synthase | 8094377 | 3001799 | SCOP2 (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
| Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
|---|---|---|---|---|---|---|---|---|
| M [auth c] | TetR_N | e6j5ic1 | A: alpha arrays | X: Ten stranded beta/alpha barrel | H: Ten stranded beta/alpha barrel | T: Ten stranded beta/alpha barrel | F: TetR_N | ECOD (v295.2) |
| L [auth b] | TetR_N | e6j5ib1 | A: alpha arrays | X: Ten stranded beta/alpha barrel | H: Ten stranded beta/alpha barrel | T: Ten stranded beta/alpha barrel | F: TetR_N | ECOD (v295.2) |
| J [auth I] | TetR_N | e6j5iI1 | A: alpha arrays | X: Ten stranded beta/alpha barrel | H: Ten stranded beta/alpha barrel | T: Ten stranded beta/alpha barrel | F: TetR_N | ECOD (v295.2) |
| I [auth H] | TetR_N | e6j5iH1 | A: alpha arrays | X: Ten stranded beta/alpha barrel | H: Ten stranded beta/alpha barrel | T: Ten stranded beta/alpha barrel | F: TetR_N | ECOD (v295.2) |
| H [auth G] | TetR_N | e6j5iG1 | A: alpha arrays | X: Ten stranded beta/alpha barrel | H: Ten stranded beta/alpha barrel | T: Ten stranded beta/alpha barrel | F: TetR_N | ECOD (v295.2) |
| F | TetR_N | e6j5iF1 | A: alpha arrays | X: Ten stranded beta/alpha barrel | H: Ten stranded beta/alpha barrel | T: Ten stranded beta/alpha barrel | F: TetR_N | ECOD (v295.2) |
| E | TetR_N | e6j5iE1 | A: alpha arrays | X: Ten stranded beta/alpha barrel | H: Ten stranded beta/alpha barrel | T: Ten stranded beta/alpha barrel | F: TetR_N | ECOD (v295.2) |
| D | TetR_N | e6j5iD1 | A: alpha arrays | X: Ten stranded beta/alpha barrel | H: Ten stranded beta/alpha barrel | T: Ten stranded beta/alpha barrel | F: TetR_N | ECOD (v295.2) |
| Z [auth O] | TetR_N | e6j5iO1 | A: alpha arrays | X: Ten stranded beta/alpha barrel | H: Ten stranded beta/alpha barrel | T: Ten stranded beta/alpha barrel | F: TetR_N | ECOD (v295.2) |
| Y [auth N] | TetR_N | e6j5iN1 | A: alpha arrays | X: Ten stranded beta/alpha barrel | H: Ten stranded beta/alpha barrel | T: Ten stranded beta/alpha barrel | F: TetR_N | ECOD (v295.2) |
| X [auth M] | TetR_N | e6j5iM1 | A: alpha arrays | X: Ten stranded beta/alpha barrel | H: Ten stranded beta/alpha barrel | T: Ten stranded beta/alpha barrel | F: TetR_N | ECOD (v295.2) |
| W [auth L] | TetR_N | e6j5iL1 | A: alpha arrays | X: Ten stranded beta/alpha barrel | H: Ten stranded beta/alpha barrel | T: Ten stranded beta/alpha barrel | F: TetR_N | ECOD (v295.2) |
| V [auth K] | TetR_N | e6j5iK1 | A: alpha arrays | X: Ten stranded beta/alpha barrel | H: Ten stranded beta/alpha barrel | T: Ten stranded beta/alpha barrel | F: TetR_N | ECOD (v295.2) |
| CA [auth R] | TetR_N | e6j5iR1 | A: alpha arrays | X: Ten stranded beta/alpha barrel | H: Ten stranded beta/alpha barrel | T: Ten stranded beta/alpha barrel | F: TetR_N | ECOD (v295.2) |
| BA [auth Q] | TetR_N | e6j5iQ1 | A: alpha arrays | X: Ten stranded beta/alpha barrel | H: Ten stranded beta/alpha barrel | T: Ten stranded beta/alpha barrel | F: TetR_N | ECOD (v295.2) |
| AA [auth P] | TetR_N | e6j5iP1 | A: alpha arrays | X: Ten stranded beta/alpha barrel | H: Ten stranded beta/alpha barrel | T: Ten stranded beta/alpha barrel | F: TetR_N | ECOD (v295.2) |
| U [auth a] | 7tm_1 | e6j5ia1 | A: alpha arrays | X: putative RnfG subunit of electron transport complex | H: putative RnfG subunit of electron transport complex | T: Class I glutamine amidotransferase-like | F: 7tm_1 | ECOD (v295.2) |
| N [auth d] | TetR_N | e6j5id1 | A: alpha arrays | X: Ten stranded beta/alpha barrel | H: Ten stranded beta/alpha barrel | T: Ten stranded beta/alpha barrel | F: TetR_N | ECOD (v295.2) |
| C | TetR_N | e6j5iC1 | A: alpha arrays | X: Ten stranded beta/alpha barrel | H: Ten stranded beta/alpha barrel | T: Ten stranded beta/alpha barrel | F: TetR_N | ECOD (v295.2) |
| B | TetR_N | e6j5iB1 | A: alpha arrays | X: Ten stranded beta/alpha barrel | H: Ten stranded beta/alpha barrel | T: Ten stranded beta/alpha barrel | F: TetR_N | ECOD (v295.2) |
| A | TetR_N | e6j5iA1 | A: alpha arrays | X: Ten stranded beta/alpha barrel | H: Ten stranded beta/alpha barrel | T: Ten stranded beta/alpha barrel | F: TetR_N | ECOD (v295.2) |
Domain Annotation: CATH CATH Database Homepage
Protein Family Annotation Pfam Database Homepage
| Chains | Accession | Name | Description | Comments | Source |
|---|---|---|---|---|---|
| K [auth S] | PF00213 | ATP synthase delta (OSCP) subunit (OSCP) | ATP synthase delta (OSCP) subunit | - | Family |
| J [auth I] | PF14960 | ATP synthase regulation (ATP_synth_reg) | ATP synthase regulation | - | Family |
| G [auth J] | PF04568 | Mitochondrial ATPase inhibitor, IATP (IATP) | Mitochondrial ATPase inhibitor, IATP | - | Family |
| PF00006 | ATP synthase alpha/beta family, nucleotide-binding domain (ATP-synt_ab) | ATP synthase alpha/beta family, nucleotide-binding domain | This entry includes the ATP synthase alpha and beta subunits, the ATP synthase associated with flagella and the termination factor Rho. | Domain | |
| PF22919 | C-terminal domain of V and A type ATP synthase (ATP-synt_VA_C) | C-terminal domain of V and A type ATP synthase | This entry represents a small alpha helical domain found at the C-terminus of a variety of ATP synthases. | Domain | |
| PF02874 | ATP synthase alpha/beta family, beta-barrel domain (ATP-synt_ab_N) | ATP synthase alpha/beta family, beta-barrel domain | This family includes the ATP synthase alpha and beta subunits the ATP synthase associated with flagella. | Domain | |
| PF10206 | Mitochondrial F1F0-ATP synthase, subunit f (WRW) | Mitochondrial F1F0-ATP synthase, subunit f | - | Family | |
| PF00006 | ATP synthase alpha/beta family, nucleotide-binding domain (ATP-synt_ab) | ATP synthase alpha/beta family, nucleotide-binding domain | This entry includes the ATP synthase alpha and beta subunits, the ATP synthase associated with flagella and the termination factor Rho. | Domain | |
| PF00119 | ATP synthase A chain (ATP-synt_A) | ATP synthase A chain | Domain | ||
| PF00306 | ATP synthase alpha/beta chain, C terminal domain (ATP-synt_ab_C) | ATP synthase alpha/beta chain, C terminal domain | Domain | ||
| PF05511 | Mitochondrial ATP synthase coupling factor 6 (ATP-synt_F6) | Mitochondrial ATP synthase coupling factor 6 | - | Family | |
| PF02874 | ATP synthase alpha/beta family, beta-barrel domain (ATP-synt_ab_N) | ATP synthase alpha/beta family, beta-barrel domain | This family includes the ATP synthase alpha and beta subunits the ATP synthase associated with flagella. | Domain | |
| PF05405 | Mitochondrial ATP synthase B chain precursor (ATP-synt_B) (Mt_ATP-synt_B) | Mitochondrial ATP synthase B chain precursor (ATP-synt_B) | - | Family |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Membrane Protein Annotation: OPM OPM Database Homepage
| Chains | External Link | Type | Class | Superfamily | Family |
|---|---|---|---|---|---|
| OPM | Transmembrane | Alpha-helical polytopic | Proton or Sodium translocating F-type, V-type and A-type ATPases | V-type and F-type ATPases |
Membrane Protein Annotation: PDBTM PDBTM Database Homepage
| Chains | External Link | Comment |
|---|---|---|
| PDBTM | Annotated as membrane protein by PDBTM |
Membrane Protein Annotation: mpstruc mpstruc Database Homepage
| Chains | Resource Link | Group | Subgroup | Protein |
|---|---|---|---|---|
| mpstruc | TRANSMEMBRANE PROTEINS: ALPHA-HELICAL | F-type ATPase | F1Fo synthase in E-state |