Structure of Amine Dehydrogenase from Mycobacterium smegmatis


Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
DRsmJe6iaqD1 A: alpha arraysX: PriB N-terminal domain-likeH: Rubredoxin-relatedT: Aconitase iron-sulfur domainF: RsmJECOD (v295.2)
CLptF_LptGe6iaqC1 A: alpha arraysX: PriB N-terminal domain-likeH: Rubredoxin-relatedT: Aconitase iron-sulfur domainF: LptF_LptGECOD (v295.2)
BLptF_LptGe6iaqB1 A: alpha arraysX: PriB N-terminal domain-likeH: Rubredoxin-relatedT: Aconitase iron-sulfur domainF: LptF_LptGECOD (v295.2)
ALptF_LptGe6iaqA1 A: alpha arraysX: PriB N-terminal domain-likeH: Rubredoxin-relatedT: Aconitase iron-sulfur domainF: LptF_LptGECOD (v295.2)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
A, B, C, D
PF193282,4-diaminopentanoate dehydrogenase C-terminal domain (DAP_DH_C)2,4-diaminopentanoate dehydrogenase C-terminal domainThis entry represents the C-terminal presumed domain from the 2,4-diaminopentanoic acid C 4 dehydrogenase enzyme [1]. This enzyme is involved in the ornithine fermentation pathway. It catalyzes the oxidative deamination of (2R,4S)-2,4-diaminopentanoa ...This entry represents the C-terminal presumed domain from the 2,4-diaminopentanoic acid C 4 dehydrogenase enzyme [1]. This enzyme is involved in the ornithine fermentation pathway. It catalyzes the oxidative deamination of (2R,4S)-2,4-diaminopentanoate (DAP) to yield 2-amino-4-ketopentanoate (AKP). The N-terminal domain has a Rossmann fold.
Domain
A, B, C, D
PF01113Dihydrodipicolinate reductase, N-terminus (DapB_N)Dihydrodipicolinate reductase, N-terminusDihydrodipicolinate reductase (DapB) reduces the alpha,beta-unsaturated cyclic imine, dihydro-dipicolinate. This reaction is the second committed step in the biosynthesis of L-lysine and its precursor meso-diaminopimelate, which are critical for bo ...Dihydrodipicolinate reductase (DapB) reduces the alpha,beta-unsaturated cyclic imine, dihydro-dipicolinate. This reaction is the second committed step in the biosynthesis of L-lysine and its precursor meso-diaminopimelate, which are critical for both protein and cell wall biosynthesis. The N-terminal domain of DapB binds the dinucleotide NADPH.
Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage