6I3M
eIF2B:eIF2 complex, phosphorylated on eIF2 alpha serine 52.
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
A | SCOP2 Family | IF2B-like | 8101522 | 4002100 | SCOP2 (2022-06-29) |
A | SCOP2 Superfamily | NagB/RpiA/CoA transferase-like | 8101523 | 3000693 | SCOP2 (2022-06-29) |
H [auth B] | SCOP2B Superfamily | NagB/RpiA/CoA transferase-like | 8101523 | 3000693 | SCOP2B (2022-06-29) |
K | SCOP2B Superfamily | eIF2alpha middle domain-like | 8042148 | 3001761 | SCOP2B (2022-06-29) |
K | SCOP2B Superfamily | Nucleic acid-binding proteins | 8042149 | 3000135 | SCOP2B (2022-06-29) |
N [auth L] | SCOP2B Superfamily | eIF2alpha middle domain-like | 8042148 | 3001761 | SCOP2B (2022-06-29) |
N [auth L] | SCOP2B Superfamily | Nucleic acid-binding proteins | 8042149 | 3000135 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | IF-2B_N_1 | e6i3mA1 | A: alpha bundles | X: Translation initiation factor eIF-2B delta subunit N-terminal helical domain (From Topology) | H: Translation initiation factor eIF-2B delta subunit N-terminal helical domain (From Topology) | T: Translation initiation factor eIF-2B delta subunit N-terminal helical domain | F: IF-2B_N_1 | ECOD (1.6) |
A | IF-2B_C | e6i3mA2 | A: a/b three-layered sandwiches | X: Rossmann-like | H: Rossmann-related | T: NagB/RpiA/CoA transferase-like | F: IF-2B_C | ECOD (1.6) |
H [auth B] | IF-2B_N_1 | e6i3mB1 | A: alpha bundles | X: Translation initiation factor eIF-2B delta subunit N-terminal helical domain (From Topology) | H: Translation initiation factor eIF-2B delta subunit N-terminal helical domain (From Topology) | T: Translation initiation factor eIF-2B delta subunit N-terminal helical domain | F: IF-2B_N_1 | ECOD (1.6) |
H [auth B] | IF-2B_C | e6i3mB2 | A: a/b three-layered sandwiches | X: Rossmann-like | H: Rossmann-related | T: NagB/RpiA/CoA transferase-like | F: IF-2B_C | ECOD (1.6) |
B [auth C] | IF-2B_N_1 | e6i3mC1 | A: alpha bundles | X: Translation initiation factor eIF-2B delta subunit N-terminal helical domain (From Topology) | H: Translation initiation factor eIF-2B delta subunit N-terminal helical domain (From Topology) | T: Translation initiation factor eIF-2B delta subunit N-terminal helical domain | F: IF-2B_N_1 | ECOD (1.6) |
B [auth C] | IF-2B_C | e6i3mC2 | A: a/b three-layered sandwiches | X: Rossmann-like | H: Rossmann-related | T: NagB/RpiA/CoA transferase-like | F: IF-2B_C | ECOD (1.6) |
C [auth D] | IF-2B_N_1 | e6i3mD2 | A: alpha bundles | X: Translation initiation factor eIF-2B delta subunit N-terminal helical domain (From Topology) | H: Translation initiation factor eIF-2B delta subunit N-terminal helical domain (From Topology) | T: Translation initiation factor eIF-2B delta subunit N-terminal helical domain | F: IF-2B_N_1 | ECOD (1.6) |
C [auth D] | IF-2B_C | e6i3mD1 | A: a/b three-layered sandwiches | X: Rossmann-like | H: Rossmann-related | T: NagB/RpiA/CoA transferase-like | F: IF-2B_C | ECOD (1.6) |
D [auth E] | KOG1465 | e6i3mE2 | A: alpha bundles | X: Translation initiation factor eIF-2B delta subunit N-terminal helical domain (From Topology) | H: Translation initiation factor eIF-2B delta subunit N-terminal helical domain (From Topology) | T: Translation initiation factor eIF-2B delta subunit N-terminal helical domain | F: KOG1465 | ECOD (1.6) |
D [auth E] | IF-2B_C | e6i3mE1 | A: a/b three-layered sandwiches | X: Rossmann-like | H: Rossmann-related | T: NagB/RpiA/CoA transferase-like | F: IF-2B_C | ECOD (1.6) |
J [auth F] | KOG1465 | e6i3mF1 | A: alpha bundles | X: Translation initiation factor eIF-2B delta subunit N-terminal helical domain (From Topology) | H: Translation initiation factor eIF-2B delta subunit N-terminal helical domain (From Topology) | T: Translation initiation factor eIF-2B delta subunit N-terminal helical domain | F: KOG1465 | ECOD (1.6) |
J [auth F] | IF-2B_C | e6i3mF2 | A: a/b three-layered sandwiches | X: Rossmann-like | H: Rossmann-related | T: NagB/RpiA/CoA transferase-like | F: IF-2B_C | ECOD (1.6) |
E [auth G] | Hexapep_2_1 | e6i3mG2 | A: beta duplicates or obligate multimers | X: Single-stranded left-handed beta-helix | H: Trimeric LpxA-like enzymes (From Topology) | T: Trimeric LpxA-like enzymes | F: Hexapep_2_1 | ECOD (1.6) |
E [auth G] | NTP_transferase | e6i3mG1 | A: a/b three-layered sandwiches | X: Nucleotide-diphospho-sugar transferases (From Topology) | H: Nucleotide-diphospho-sugar transferases (From Topology) | T: Nucleotide-diphospho-sugar transferases | F: NTP_transferase | ECOD (1.6) |
I [auth H] | Hexapep_2_1 | e6i3mH2 | A: beta duplicates or obligate multimers | X: Single-stranded left-handed beta-helix | H: Trimeric LpxA-like enzymes (From Topology) | T: Trimeric LpxA-like enzymes | F: Hexapep_2_1 | ECOD (1.6) |
I [auth H] | NTP_transferase | e6i3mH1 | A: a/b three-layered sandwiches | X: Nucleotide-diphospho-sugar transferases (From Topology) | H: Nucleotide-diphospho-sugar transferases (From Topology) | T: Nucleotide-diphospho-sugar transferases | F: NTP_transferase | ECOD (1.6) |
F [auth I] | NTP_transferase | e6i3mI1 | A: a/b three-layered sandwiches | X: Nucleotide-diphospho-sugar transferases (From Topology) | H: Nucleotide-diphospho-sugar transferases (From Topology) | T: Nucleotide-diphospho-sugar transferases | F: NTP_transferase | ECOD (1.6) |
G [auth J] | NTP_transferase | e6i3mJ1 | A: a/b three-layered sandwiches | X: Nucleotide-diphospho-sugar transferases (From Topology) | H: Nucleotide-diphospho-sugar transferases (From Topology) | T: Nucleotide-diphospho-sugar transferases | F: NTP_transferase | ECOD (1.6) |
K | S1_1 | e6i3mK2 | A: beta barrels | X: OB-fold | H: Nucleic acid-binding proteins (From Topology) | T: Nucleic acid-binding proteins | F: S1_1 | ECOD (1.6) |
K | EIF_2_alpha_N | e6i3mK1 | A: alpha arrays | X: HhH/H2TH | H: eIF2alpha middle domain (From Topology) | T: eIF2alpha middle domain | F: EIF_2_alpha_N | ECOD (1.6) |
K | EIF_2_alpha_C | e6i3mK3 | A: a+b two layers | X: Alpha-beta plaits | H: eIF-2-alpha, C-terminal domain (From Topology) | T: eIF-2-alpha, C-terminal domain | F: EIF_2_alpha_C | ECOD (1.6) |
N [auth L] | S1_1 | e6i3mL2 | A: beta barrels | X: OB-fold | H: Nucleic acid-binding proteins (From Topology) | T: Nucleic acid-binding proteins | F: S1_1 | ECOD (1.6) |
N [auth L] | EIF_2_alpha_N | e6i3mL3 | A: alpha arrays | X: HhH/H2TH | H: eIF2alpha middle domain (From Topology) | T: eIF2alpha middle domain | F: EIF_2_alpha_N | ECOD (1.6) |
N [auth L] | EIF_2_alpha_C | e6i3mL1 | A: a+b two layers | X: Alpha-beta plaits | H: eIF-2-alpha, C-terminal domain (From Topology) | T: eIF-2-alpha, C-terminal domain | F: EIF_2_alpha_C | ECOD (1.6) |
M [auth O] | GTP_EFTU_D2_2 | e6i3mO4 | A: beta barrels | X: cradle loop barrel | H: RIFT-related | T: Alanine racemase-C | F: GTP_EFTU_D2_2 | ECOD (1.6) |
M [auth O] | eIF2_C | e6i3mO2 | A: beta barrels | X: cradle loop barrel | H: RIFT-related | T: Aminomethyltransferase beta-barrel domain | F: eIF2_C | ECOD (1.6) |
M [auth O] | MnmE_helical_2nd | e6i3mO3 | A: a/b three-layered sandwiches | X: P-loop domains-like | H: P-loop domains-related | T: P-loop containing nucleoside triphosphate hydrolases | F: MnmE_helical_2nd | ECOD (1.6) |
M [auth O] | KOG0466 | e6i3mO1 | A: few secondary structure elements | X: Rubredoxin-like | H: Rubredoxin-related | T: Rubredoxin-related | F: KOG0466 | ECOD (1.6) |
P | GTP_EFTU_D2_2 | e6i3mP4 | A: beta barrels | X: cradle loop barrel | H: RIFT-related | T: Alanine racemase-C | F: GTP_EFTU_D2_2 | ECOD (1.6) |
P | eIF2_C | e6i3mP3 | A: beta barrels | X: cradle loop barrel | H: RIFT-related | T: Aminomethyltransferase beta-barrel domain | F: eIF2_C | ECOD (1.6) |
P | MnmE_helical_2nd | e6i3mP2 | A: a/b three-layered sandwiches | X: P-loop domains-like | H: P-loop domains-related | T: P-loop containing nucleoside triphosphate hydrolases | F: MnmE_helical_2nd | ECOD (1.6) |
P | KOG0466 | e6i3mP1 | A: few secondary structure elements | X: Rubredoxin-like | H: Rubredoxin-related | T: Rubredoxin-related | F: KOG0466 | ECOD (1.6) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
A, H [auth B] | PF01008 | Initiation factor 2 subunit family (IF-2B) | Initiation factor 2 subunit family | - | Family |
B [auth C], C [auth D] | PF01008 | Initiation factor 2 subunit family (IF-2B) | Initiation factor 2 subunit family | - | Family |
D [auth E], J [auth F] | PF01008 | Initiation factor 2 subunit family (IF-2B) | Initiation factor 2 subunit family | - | Family |
E [auth G], I [auth H] | PF00483 | Nucleotidyl transferase (NTP_transferase) | Nucleotidyl transferase | - | Family |
K, N [auth L] | PF07541 | Eukaryotic translation initiation factor 2 alpha subunit (EIF_2_alpha) | Eukaryotic translation initiation factor 2 alpha subunit | - | Family |
K, N [auth L] | PF00575 | S1 RNA binding domain (S1) | S1 RNA binding domain | The S1 domain occurs in a wide range of RNA associated proteins. It is structurally similar to cold shock protein which binds nucleic acids. The S1 domain has an OB-fold structure. | Domain |
M [auth O], P | PF00009 | Elongation factor Tu GTP binding domain (GTP_EFTU) | Elongation factor Tu GTP binding domain | This domain contains a P-loop motif, also found in several other families such as Pfam:PF00071, Pfam:PF00025 and Pfam:PF00063. Elongation factor Tu consists of three structural domains, this plus two C-terminal beta barrel domains. | Domain |
M [auth O], P | PF09173 | Initiation factor eIF2 gamma, C terminal (eIF2_C) | Initiation factor eIF2 gamma, C terminal | Members of this family, which are found in the initiation factors eIF2 and EF-Tu, adopt a structure consisting of a beta barrel with Greek key topology. They are required for formation of the ternary complex with GTP and initiator tRNA [1]. | Domain |
M [auth O], P | PF03144 | Elongation factor Tu domain 2 (GTP_EFTU_D2) | Elongation factor Tu domain 2 | Elongation factor Tu consists of three structural domains, this is the second domain. This domain adopts a beta barrel structure. This the second domain is involved in binding to charged tRNA [1]. This domain is also found in other proteins such as e ... | Domain |