6I07
Crystal structure of EpCAM in complex with scFv
Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage
Chains | Domain Info | Class | Fold | Superfamily | Family | Domain | Species | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | d6i07a1 | All beta proteins | Immunoglobulin-like beta-sandwich | Immunoglobulin | automated matches | automated matches | Human (Homo sapiens ) [TaxId: 9606 ], | SCOPe (2.08) |
B | d6i07b1 | All beta proteins | Immunoglobulin-like beta-sandwich | Immunoglobulin | automated matches | automated matches | Human (Homo sapiens ) [TaxId: 9606 ], | SCOPe (2.08) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | V-set_8 | e6i07A1 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: V-set_8 | ECOD (1.6) |
A | V-set | e6i07A2 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: V-set | ECOD (1.6) |
B | V-set_8 | e6i07B2 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: V-set_8 | ECOD (1.6) |
B | V-set | e6i07B1 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: V-set | ECOD (1.6) |
C | EUF08377 | e6i07C1 | A: a+b two layers | X: Alpha-beta plaits | H: Ferredoxin-like domain of receptor-type protein tyrosine phosphatase (From Topology) | T: Ferredoxin-like domain of receptor-type protein tyrosine phosphatase | F: EUF08377 | ECOD (1.6) |
C | Thyroglobulin_1 | e6i07C2 | A: few secondary structure elements | X: Thyroglobulin type-1 domain (From Topology) | H: Thyroglobulin type-1 domain (From Topology) | T: Thyroglobulin type-1 domain | F: Thyroglobulin_1 | ECOD (1.6) |
C | EUF08757 | e6i07C3 | A: few secondary structure elements | X: N-terminal domain of EpCAM (From Topology) | H: N-terminal domain of EpCAM (From Topology) | T: N-terminal domain of EpCAM | F: EUF08757 | ECOD (1.6) |
D | EUF08377 | e6i07D1 | A: a+b two layers | X: Alpha-beta plaits | H: Ferredoxin-like domain of receptor-type protein tyrosine phosphatase (From Topology) | T: Ferredoxin-like domain of receptor-type protein tyrosine phosphatase | F: EUF08377 | ECOD (1.6) |
D | Thyroglobulin_1 | e6i07D2 | A: few secondary structure elements | X: Thyroglobulin type-1 domain (From Topology) | H: Thyroglobulin type-1 domain (From Topology) | T: Thyroglobulin type-1 domain | F: Thyroglobulin_1 | ECOD (1.6) |
D | EUF08757 | e6i07D3 | A: few secondary structure elements | X: N-terminal domain of EpCAM (From Topology) | H: N-terminal domain of EpCAM (From Topology) | T: N-terminal domain of EpCAM | F: EUF08757 | ECOD (1.6) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF21283 | EPCAM/Trop-2, C-terminal (EPCAM-Trop-2_C) | EPCAM/Trop-2, C-terminal | EpCAM (epithelial cell adhesion molecule, also known as Trop-1) and Trop-2 (also known as tumor-associated calcium signal transducer 2, TACSTD2) are transmembrane glycoproteins that belong to the tumour-associated calcium signal transducer (TACSTD) f ... | Domain | |
PF00086 | Thyroglobulin type-1 repeat (Thyroglobulin_1) | Thyroglobulin type-1 repeat | Thyroglobulin type 1 repeats are thought to be involved in the control of proteolytic degradation [2]. The domain usually contains six conserved cysteines. These form three disulphide bridges. Cysteines 1 pairs with 2, 3 with 4 and 5 with 6. | Domain | |
PF18635 | Epithelial cell adhesion molecule, N-terminal domain (EpCAM_N) | Epithelial cell adhesion molecule, N-terminal domain | EpCAM (epithelial cell adhesion molecule), a stem and carcinoma cell marker, is a cell surface protein involved in homotypic cell-cell adhesion via intercellular oligomerization and proliferative signalling via proteolytic cleavage. Structure analysi ... | Domain |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
IPR043406 | Transmembrane glycoprotein EPCAM/Trop-2 | Family | |
IPR049420 | EPCAM/Trop-2, C-terminal | Domain | |
IPR041630 | Epithelial cell adhesion molecule N-terminal domain | Domain | |
IPR036857 | Thyroglobulin type-1 superfamily | Homologous Superfamily | |
IPR000716 | Thyroglobulin type-1 | Domain |