6HT5
Oct4/Sox2:UTF1 structure
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
C [auth D] | SCOP2B Superfamily | HMG-box | 8042275 | 3001368 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
C [auth D] | HMG_box | e6ht5D1 | A: alpha arrays | X: HMG-box (From Topology) | H: HMG-box (From Topology) | T: HMG-box | F: HMG_box | ECOD (1.6) |
D [auth E] | Pou | e6ht5E1 | A: alpha arrays | X: HTH | H: HTH | T: tetra-helical, lambda repressor-like | F: Pou | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
---|---|---|---|---|---|---|
C [auth D] | 1.10.30.10 | Mainly Alpha | Orthogonal Bundle | DNA Binding (I), subunit A | High mobility group box domain | CATH (utative) |
D [auth E] | 1.10.260.40 | Mainly Alpha | Orthogonal Bundle | 434 Repressor (Amino-terminal Domain) | lambda repressor-like DNA-binding domains | CATH (utative) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
C [auth D] | PF00505 | HMG (high mobility group) box (HMG_box) | HMG (high mobility group) box | - | Domain |
D [auth E] | PF00046 | Homeodomain (Homeodomain) | Homeodomain | - | Domain |
D [auth E] | PF00157 | Pou domain - N-terminal to homeobox domain (Pou) | Pou domain - N-terminal to homeobox domain | - | Domain |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
C [auth D] | IPR036910 | High mobility group box domain superfamily | Homologous Superfamily |
C [auth D] | IPR022097 | Transcription factor SOX | Family |
C [auth D] | IPR050140 | SRY-related HMG-box transcription factors | Family |
C [auth D] | IPR009071 | High mobility group box domain | Domain |
D [auth E] | IPR013847 | POU domain | Domain |
D [auth E] | IPR009057 | Homedomain-like superfamily | Homologous Superfamily |
D [auth E] | IPR001356 | Homeodomain | Domain |
D [auth E] | IPR000327 | POU-specific domain | Domain |
D [auth E] | IPR017970 | Homeobox, conserved site | Conserved Site |
D [auth E] | IPR050255 | POU domain transcription factor | Family |
D [auth E] | IPR010982 | Lambda repressor-like, DNA-binding domain superfamily | Homologous Superfamily |