Annotations: 6HM2

Structure in P1 form of the PBP AgtB in complex with agropinic acid from A.tumefacien R10

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
A	d6hm2a1	Alpha and beta proteins (a/b)	Periplasmic binding protein-like II	Periplasmic binding protein-like II	automated matches	automated matches	(Agrobacterium tumefaciens LBA4213 (Ach5) ) [TaxId: 1435057 ],	SCOPe (2.08)
A	d6hm2a2	Artifacts	Tags	Tags	Tags	N-terminal Tags	(Agrobacterium tumefaciens LBA4213 (Ach5) ) [TaxId: 1435057 ],	SCOPe (2.08)
B	d6hm2b1	Alpha and beta proteins (a/b)	Periplasmic binding protein-like II	Periplasmic binding protein-like II	automated matches	automated matches	(Agrobacterium tumefaciens LBA4213 (Ach5) ) [TaxId: 1435057 ],	SCOPe (2.08)
B	d6hm2b2	Artifacts	Tags	Tags	Tags	N-terminal Tags	(Agrobacterium tumefaciens LBA4213 (Ach5) ) [TaxId: 1435057 ],	SCOPe (2.08)
D	d6hm2d1	Alpha and beta proteins (a/b)	Periplasmic binding protein-like II	Periplasmic binding protein-like II	automated matches	automated matches	(Agrobacterium tumefaciens LBA4213 (Ach5) ) [TaxId: 1435057 ],	SCOPe (2.08)
D	d6hm2d2	Artifacts	Tags	Tags	Tags	N-terminal Tags	(Agrobacterium tumefaciens LBA4213 (Ach5) ) [TaxId: 1435057 ],	SCOPe (2.08)
E	d6hm2e1	Alpha and beta proteins (a/b)	Periplasmic binding protein-like II	Periplasmic binding protein-like II	automated matches	automated matches	(Agrobacterium tumefaciens LBA4213 (Ach5) ) [TaxId: 1435057 ],	SCOPe (2.08)
E	d6hm2e2	Artifacts	Tags	Tags	Tags	N-terminal Tags	(Agrobacterium tumefaciens LBA4213 (Ach5) ) [TaxId: 1435057 ],	SCOPe (2.08)
C	d6hm2c1	Alpha and beta proteins (a/b)	Periplasmic binding protein-like II	Periplasmic binding protein-like II	automated matches	automated matches	(Agrobacterium tumefaciens LBA4213 (Ach5) ) [TaxId: 1435057 ],	SCOPe (2.08)
C	d6hm2c2	Artifacts	Tags	Tags	Tags	N-terminal Tags	(Agrobacterium tumefaciens LBA4213 (Ach5) ) [TaxId: 1435057 ],	SCOPe (2.08)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A	Oxidored_q2	e6hm2A1	A: alpha arrays	X: PriB N-terminal domain-like	H: Ubiquitin-related	T: Ubiquitin-like	F: Oxidored_q2	ECOD (v295.2)
B	Oxidored_q2	e6hm2B1	A: alpha arrays	X: PriB N-terminal domain-like	H: Ubiquitin-related	T: Ubiquitin-like	F: Oxidored_q2	ECOD (v295.2)
D	Oxidored_q2	e6hm2D1	A: alpha arrays	X: PriB N-terminal domain-like	H: Ubiquitin-related	T: Ubiquitin-like	F: Oxidored_q2	ECOD (v295.2)
E	Oxidored_q2	e6hm2E1	A: alpha arrays	X: PriB N-terminal domain-like	H: Ubiquitin-related	T: Ubiquitin-like	F: Oxidored_q2	ECOD (v295.2)
C	Oxidored_q2	e6hm2C1	A: alpha arrays	X: PriB N-terminal domain-like	H: Ubiquitin-related	T: Ubiquitin-like	F: Oxidored_q2	ECOD (v295.2)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
A	3.40.190.10	Alpha Beta	3-Layer(aba) Sandwich	D-Maltodextrin-Binding Protein	domain 2	CATH (4.3.0)
B	3.40.190.10	Alpha Beta	3-Layer(aba) Sandwich	D-Maltodextrin-Binding Protein	domain 2	CATH (4.3.0)
D	3.40.190.10	Alpha Beta	3-Layer(aba) Sandwich	D-Maltodextrin-Binding Protein	domain 2	CATH (4.3.0)
E	3.40.190.10	Alpha Beta	3-Layer(aba) Sandwich	D-Maltodextrin-Binding Protein	domain 2	CATH (4.3.0)
C	3.40.190.10	Alpha Beta	3-Layer(aba) Sandwich	D-Maltodextrin-Binding Protein	domain 2	CATH (4.3.0)

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B, C, D, E	Agropine permease	cation binding vitamin binding thiamine binding binding ion binding alcohol binding heterocyclic compound binding small molecule binding sulfur compound binding polyamine binding amine binding thiamine pyrophosphate binding anion binding quaternary ammonium group binding	localization nitrogen compound transport transport sulfur compound transport vitamin transport establishment of localization thiamine transport polyamine transport	cellular anatomical structure extracellular region outer membrane-bounded periplasmic space cell envelope periplasmic space

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B, C, D, E	IPR006059	Bacterial-type extracellular solute-binding protein	Family
A, B, C, D, E	IPR001188	Spermidine/putrescine-binding periplasmic protein	Family