Annotations: 6H7W

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
A [auth J]	SCOP2B Superfamily	Arrestin/Vps26-like	8067161	3002071	SCOP2B (2022-06-29)
A [auth J]	SCOP2B Superfamily	Arrestin/Vps26-like	8102529	3002071	SCOP2B (2022-06-29)
B [auth C]	SCOP2 Family	Vps26-like	8067160	4004065	SCOP2 (2022-06-29)
B [auth C]	SCOP2 Superfamily	Arrestin/Vps26-like	8067161	3002071	SCOP2 (2022-06-29)
B [auth C]	SCOP2 Superfamily	Arrestin/Vps26-like	8102529	3002071	SCOP2 (2022-06-29)
C [auth B]	SCOP2B Superfamily	PX domain	8084581	3001006	SCOP2B (2022-06-29)
C [auth B]	SCOP2B Superfamily	BAR/IMD domain-like	8084772	3000528	SCOP2B (2022-06-29)
D [auth A]	SCOP2B Superfamily	BAR/IMD domain-like	8084772	3000528	SCOP2B (2022-06-29)
D [auth A]	SCOP2B Superfamily	PX domain	8084581	3001006	SCOP2B (2022-06-29)
F [auth G]	SCOP2B Superfamily	PX domain	8084581	3001006	SCOP2B (2022-06-29)
F [auth G]	SCOP2B Superfamily	BAR/IMD domain-like	8084772	3000528	SCOP2B (2022-06-29)
G [auth E]	SCOP2B Superfamily	BAR/IMD domain-like	8084772	3000528	SCOP2B (2022-06-29)
G [auth E]	SCOP2B Superfamily	PX domain	8084581	3001006	SCOP2B (2022-06-29)
J [auth P]	SCOP2B Superfamily	BAR/IMD domain-like	8084772	3000528	SCOP2B (2022-06-29)
J [auth P]	SCOP2B Superfamily	PX domain	8084581	3001006	SCOP2B (2022-06-29)
L [auth N]	SCOP2B Superfamily	PX domain	8084581	3001006	SCOP2B (2022-06-29)
L [auth N]	SCOP2B Superfamily	BAR/IMD domain-like	8084772	3000528	SCOP2B (2022-06-29)
M [auth H]	SCOP2B Superfamily	PX domain	8084581	3001006	SCOP2B (2022-06-29)
M [auth H]	SCOP2B Superfamily	BAR/IMD domain-like	8084772	3000528	SCOP2B (2022-06-29)
N [auth F]	SCOP2B Superfamily	PX domain	8084581	3001006	SCOP2B (2022-06-29)
N [auth F]	SCOP2B Superfamily	BAR/IMD domain-like	8084772	3000528	SCOP2B (2022-06-29)
E [auth D]	SCOP2 Family	PX domain	8084580	4003533	SCOP2 (2022-06-29)
E [auth D]	SCOP2 Superfamily	PX domain	8084581	3001006	SCOP2 (2022-06-29)
H [auth K]	SCOP2B Superfamily	PX domain	8084581	3001006	SCOP2B (2022-06-29)
O [auth V]	SCOP2B Superfamily	PX domain	8084581	3001006	SCOP2B (2022-06-29)
P [auth L]	SCOP2B Superfamily	PX domain	8084581	3001006	SCOP2B (2022-06-29)
I [auth O]	SCOP2B Superfamily	BAR/IMD domain-like	8084772	3000528	SCOP2B (2022-06-29)
K [auth M]	SCOP2 Family	Vps5 C-terminal domain-like	8084771	4004079	SCOP2 (2022-06-29)
K [auth M]	SCOP2 Superfamily	BAR/IMD domain-like	8084772	3000528	SCOP2 (2022-06-29)
Q [auth S]	SCOP2B Superfamily	Metallo-dependent phosphatases	8085939	3001067	SCOP2B (2022-06-29)
S [auth T]	SCOP2B Superfamily	Metallo-dependent phosphatases	8085939	3001067	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A [auth J]	Vps26_C	e6h7wJ1	A: beta sandwiches	X: Immunoglobulin-like beta-sandwich	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: Vps26_C	ECOD (1.6)
A [auth J]	Vps26_N	e6h7wJ2	A: beta sandwiches	X: Immunoglobulin-like beta-sandwich	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: Vps26_N	ECOD (1.6)
B [auth C]	Vps26_C	e6h7wC1	A: beta sandwiches	X: Immunoglobulin-like beta-sandwich	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: Vps26_C	ECOD (1.6)
B [auth C]	Vps26_N	e6h7wC2	A: beta sandwiches	X: Immunoglobulin-like beta-sandwich	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: Vps26_N	ECOD (1.6)
C [auth B]	Vps5	e6h7wB1	A: alpha duplicates or obligate multimers	X: BAR/IMD domain-like	H: BAR/IMD domain-like (From Topology)	T: BAR/IMD domain-like	F: Vps5	ECOD (1.6)
C [auth B]	PX	e6h7wB2	A: a+b two layers	X: PX domain (From Topology)	H: PX domain (From Topology)	T: PX domain	F: PX	ECOD (1.6)
D [auth A]	Vps5	e6h7wA1	A: alpha duplicates or obligate multimers	X: BAR/IMD domain-like	H: BAR/IMD domain-like (From Topology)	T: BAR/IMD domain-like	F: Vps5	ECOD (1.6)
D [auth A]	PX	e6h7wA2	A: a+b two layers	X: PX domain (From Topology)	H: PX domain (From Topology)	T: PX domain	F: PX	ECOD (1.6)
F [auth G]	Vps5	e6h7wG2	A: alpha duplicates or obligate multimers	X: BAR/IMD domain-like	H: BAR/IMD domain-like (From Topology)	T: BAR/IMD domain-like	F: Vps5	ECOD (1.6)
F [auth G]	PX	e6h7wG1	A: a+b two layers	X: PX domain (From Topology)	H: PX domain (From Topology)	T: PX domain	F: PX	ECOD (1.6)
G [auth E]	Vps5	e6h7wE1	A: alpha duplicates or obligate multimers	X: BAR/IMD domain-like	H: BAR/IMD domain-like (From Topology)	T: BAR/IMD domain-like	F: Vps5	ECOD (1.6)
G [auth E]	PX	e6h7wE2	A: a+b two layers	X: PX domain (From Topology)	H: PX domain (From Topology)	T: PX domain	F: PX	ECOD (1.6)
J [auth P]	Vps5	e6h7wP1	A: alpha duplicates or obligate multimers	X: BAR/IMD domain-like	H: BAR/IMD domain-like (From Topology)	T: BAR/IMD domain-like	F: Vps5	ECOD (1.6)
J [auth P]	PX	e6h7wP2	A: a+b two layers	X: PX domain (From Topology)	H: PX domain (From Topology)	T: PX domain	F: PX	ECOD (1.6)
L [auth N]	Vps5	e6h7wN1	A: alpha duplicates or obligate multimers	X: BAR/IMD domain-like	H: BAR/IMD domain-like (From Topology)	T: BAR/IMD domain-like	F: Vps5	ECOD (1.6)
L [auth N]	PX	e6h7wN2	A: a+b two layers	X: PX domain (From Topology)	H: PX domain (From Topology)	T: PX domain	F: PX	ECOD (1.6)
M [auth H]	Vps5	e6h7wH2	A: alpha duplicates or obligate multimers	X: BAR/IMD domain-like	H: BAR/IMD domain-like (From Topology)	T: BAR/IMD domain-like	F: Vps5	ECOD (1.6)
M [auth H]	PX	e6h7wH1	A: a+b two layers	X: PX domain (From Topology)	H: PX domain (From Topology)	T: PX domain	F: PX	ECOD (1.6)
N [auth F]	Vps5	e6h7wF2	A: alpha duplicates or obligate multimers	X: BAR/IMD domain-like	H: BAR/IMD domain-like (From Topology)	T: BAR/IMD domain-like	F: Vps5	ECOD (1.6)
N [auth F]	PX	e6h7wF1	A: a+b two layers	X: PX domain (From Topology)	H: PX domain (From Topology)	T: PX domain	F: PX	ECOD (1.6)
E [auth D]	PX	e6h7wD1	A: a+b two layers	X: PX domain (From Topology)	H: PX domain (From Topology)	T: PX domain	F: PX	ECOD (1.6)
H [auth K]	PX	e6h7wK1	A: a+b two layers	X: PX domain (From Topology)	H: PX domain (From Topology)	T: PX domain	F: PX	ECOD (1.6)
O [auth V]	PX	e6h7wV1	A: a+b two layers	X: PX domain (From Topology)	H: PX domain (From Topology)	T: PX domain	F: PX	ECOD (1.6)
P [auth L]	PX	e6h7wL1	A: a+b two layers	X: PX domain (From Topology)	H: PX domain (From Topology)	T: PX domain	F: PX	ECOD (1.6)
I [auth O]	Vps5	e6h7wO1	A: alpha duplicates or obligate multimers	X: BAR/IMD domain-like	H: BAR/IMD domain-like (From Topology)	T: BAR/IMD domain-like	F: Vps5	ECOD (1.6)
K [auth M]	Vps5	e6h7wM1	A: alpha duplicates or obligate multimers	X: BAR/IMD domain-like	H: BAR/IMD domain-like (From Topology)	T: BAR/IMD domain-like	F: Vps5	ECOD (1.6)
Q [auth S]	Metallophos_2	e6h7wS1	A: a+b four layers	X: Carbon-nitrogen hydrolase-like	H: Metallo-dependent phosphatases (From Topology)	T: Metallo-dependent phosphatases	F: Metallophos_2	ECOD (1.6)
S [auth T]	Metallophos_2	e6h7wT1	A: a+b four layers	X: Carbon-nitrogen hydrolase-like	H: Metallo-dependent phosphatases (From Topology)	T: Metallo-dependent phosphatases	F: Metallophos_2	ECOD (1.6)
R [auth Q]	Vps35	e6h7wQ2	A: alpha superhelices	X: Repetitive alpha hairpins	H: ARM repeat (From Topology)	T: ARM repeat	F: Vps35	ECOD (1.6)
T [auth R]	Vps35	e6h7wR2	A: alpha superhelices	X: Repetitive alpha hairpins	H: ARM repeat (From Topology)	T: ARM repeat	F: Vps35	ECOD (1.6)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A [auth J], B [auth C]	PF03643	Vacuolar protein sorting-associated protein 26 (Vps26)	Vacuolar protein sorting-associated protein 26	-	Family
C [auth B], D [auth A], F [auth G], G [auth E], J [auth P], C [auth B], D [auth A], F [auth G], G [auth E], J [auth P], L [auth N], M [auth H], N [auth F]	PF00787	PX domain (PX)	PX domain	PX domains bind to phosphoinositides.	Domain
E [auth D], H [auth K], O [auth V], P [auth L]	PF00787	PX domain (PX)	PX domain	PX domains bind to phosphoinositides.	Domain
I [auth O], K [auth M]	PF09325	Vps5 C terminal like (Vps5)	Vps5 C terminal like	Vps5 is a sorting nexin that functions in membrane trafficking. This is the C terminal dimerisation domain [1].	Domain
Q [auth S], S [auth T]	PF12850	Calcineurin-like phosphoesterase superfamily domain (Metallophos_2)	Calcineurin-like phosphoesterase superfamily domain	Members of this family are part of the Calcineurin-like phosphoesterase superfamily.	Domain
R [auth Q], T [auth R]	PF03635	Vacuolar protein sorting-associated protein 35 (Vps35)	Vacuolar protein sorting-associated protein 35	-	Repeat

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A [auth J], B [auth C]	Vacuolar protein sorting-associated protein 26-like protein	-	protein localization cellular localization establishment of protein localization nitrogen compound transport transport intracellular transport establishment of localization localization protein transport establishment of localization in cell cellular macromolecule localization macromolecule localization cellular process intracellular protein transport	-
C [auth B], D [auth A], F [auth G], G [auth E], J [auth P], C [auth B], D [auth A], F [auth G], G [auth E], J [auth P], L [auth N], M [auth H], N [auth F]	Putative vacuolar protein sorting-associated protein	binding phospholipid binding lipid binding phosphatidylinositol binding identical protein binding protein binding	-	-
E [auth D], H [auth K], O [auth V], P [auth L]	Putative vacuolar protein sorting-associated protein	binding phospholipid binding lipid binding phosphatidylinositol binding identical protein binding protein binding	-	-
I [auth O], K [auth M]	Putative vacuolar protein sorting-associated protein	binding phospholipid binding lipid binding phosphatidylinositol binding identical protein binding protein binding	-	-
Q [auth S], S [auth T]	Vacuolar protein sorting-associated protein 29	-	cellular localization transport intracellular transport establishment of localization vesicle-mediated transport endosomal transport localization cytosolic transport retrograde transport, endosome to Golgi establishment of localization in cell cellular process protein localization establishment of protein localization nitrogen compound transport cellular localization transport intracellular transport establishment of localization vesicle-mediated transport endosomal transport localization cytosolic transport retrograde transport, endosome to Golgi establishment of localization in cell cellular process protein localization establishment of protein localization nitrogen compound transport protein transport cellular macromolecule localization macromolecule localization	cellular anatomical structure intracellular anatomical structure cytoplasm cytosol protein-containing complex membrane membrane protein complex retromer complex endomembrane system
R [auth Q], T [auth R]	Vacuolar protein sorting-associated protein 35	-	cellular localization transport intracellular transport establishment of localization vesicle-mediated transport endosomal transport localization cytosolic transport retrograde transport, endosome to Golgi establishment of localization in cell cellular process protein localization establishment of protein localization nitrogen compound transport cellular localization transport intracellular transport establishment of localization vesicle-mediated transport endosomal transport localization cytosolic transport retrograde transport, endosome to Golgi establishment of localization in cell cellular process protein localization establishment of protein localization nitrogen compound transport protein transport cellular macromolecule localization macromolecule localization	cellular anatomical structure intracellular anatomical structure cytoplasm cytosol protein-containing complex membrane membrane protein complex retromer, cargo-selective complex retromer complex endomembrane system

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A [auth J], B [auth C]	IPR014752	Arrestin-like, C-terminal	Homologous Superfamily
A [auth J], B [auth C]	IPR028934	Vacuolar protein sorting protein 26 related	Family
C [auth B], D [auth A], F [auth G], G [auth E], J [auth P], C [auth B], D [auth A], F [auth G], G [auth E], J [auth P], L [auth N], M [auth H], N [auth F]	IPR027267	AH/BAR domain superfamily	Homologous Superfamily
C [auth B], D [auth A], F [auth G], G [auth E], J [auth P], C [auth B], D [auth A], F [auth G], G [auth E], J [auth P], L [auth N], M [auth H], N [auth F]	IPR015404	Sorting nexin/Vps5-like, C-terminal	Domain
C [auth B], D [auth A], F [auth G], G [auth E], J [auth P], C [auth B], D [auth A], F [auth G], G [auth E], J [auth P], L [auth N], M [auth H], N [auth F]	IPR001683	Phox homology	Domain
C [auth B], D [auth A], F [auth G], G [auth E], J [auth P], C [auth B], D [auth A], F [auth G], G [auth E], J [auth P], L [auth N], M [auth H], N [auth F]	IPR035803	Sorting nexin Vps5, BAR domain	Domain
C [auth B], D [auth A], F [auth G], G [auth E], J [auth P], C [auth B], D [auth A], F [auth G], G [auth E], J [auth P], L [auth N], M [auth H], N [auth F]	IPR036871	PX domain superfamily	Homologous Superfamily
E [auth D], H [auth K], O [auth V], P [auth L]	IPR027267	AH/BAR domain superfamily	Homologous Superfamily
E [auth D], H [auth K], O [auth V], P [auth L]	IPR015404	Sorting nexin/Vps5-like, C-terminal	Domain
E [auth D], H [auth K], O [auth V], P [auth L]	IPR001683	Phox homology	Domain
E [auth D], H [auth K], O [auth V], P [auth L]	IPR035803	Sorting nexin Vps5, BAR domain	Domain
E [auth D], H [auth K], O [auth V], P [auth L]	IPR036871	PX domain superfamily	Homologous Superfamily
I [auth O], K [auth M]	IPR027267	AH/BAR domain superfamily	Homologous Superfamily
I [auth O], K [auth M]	IPR015404	Sorting nexin/Vps5-like, C-terminal	Domain
I [auth O], K [auth M]	IPR001683	Phox homology	Domain
I [auth O], K [auth M]	IPR035803	Sorting nexin Vps5, BAR domain	Domain
I [auth O], K [auth M]	IPR036871	PX domain superfamily	Homologous Superfamily
Q [auth S], S [auth T]	IPR000979	Phosphodiesterase MJ0936/Vps29	Family
Q [auth S], S [auth T]	IPR028661	Vacuolar protein sorting-associated protein 29	Family
Q [auth S], S [auth T]	IPR024654	Calcineurin-like phosphoesterase domain, lpxH-type	Domain
Q [auth S], S [auth T]	IPR029052	Metallo-dependent phosphatase-like	Homologous Superfamily
R [auth Q], T [auth R]	IPR042491	Vacuolar protein sorting-associated protein 35, C-terminal	Homologous Superfamily
R [auth Q], T [auth R]	IPR005378	Vacuolar protein sorting-associated protein 35	Family

Membrane Protein Annotation: mpstruc mpstruc Database Homepage

Chains	Resource Link	Group	Subgroup	Protein
R [auth Q], T [auth R]	mpstruc	MONOTOPIC MEMBRANE PROTEINS	Membrane-Shaping Proteins (monotopic)	Retromer Vps26-Vps29-Vps35 complex

6H7W

Model of retromer-Vps5 complex assembled on membrane.

External Resource: Annotation

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Domain Annotation: ECOD Classification ECOD Database Homepage

Protein Family Annotation Pfam Database Homepage

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

InterPro: Protein Family Classification InterPro Database Homepage

Membrane Protein Annotation: mpstruc mpstruc Database Homepage

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6H7W

Model of retromer-Vps5 complex assembled on membrane.

External Resource: Annotation

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Domain Annotation: ECOD Classification ECOD Database Homepage

Protein Family Annotation Pfam Database Homepage

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

InterPro: Protein Family Classification InterPro Database Homepage

Membrane Protein Annotation: mpstruc mpstruc Database Homepage