6GSA
Core Centromere Binding Factor 3 (CBF3) with monomeric Ndc10
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
B | SCOP2B Superfamily | Cep3/Upc2 domain-like | 8093129 | 3002679 | SCOP2B (2022-06-29) |
B | SCOP2B Superfamily | ARM repeat-like | 8093131 | 3000116 | SCOP2B (2022-06-29) |
A | SCOP2B Superfamily | Cep3/Upc2 domain-like | 8093129 | 3002679 | SCOP2B (2022-06-29) |
A | SCOP2B Superfamily | ARM repeat-like | 8093131 | 3000116 | SCOP2B (2022-06-29) |
C | SCOP2B Superfamily | Skp1 dimerisation domain-like | 8043773 | 3000564 | SCOP2B (2022-06-29) |
E | SCOP2B Superfamily | DNA breaking-rejoining enzymes | 8053766 | 3001127 | SCOP2B (2022-06-29) |
E | SCOP2B Superfamily | lambda integrase clamp domain-like | 8053778 | 3000550 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
B | Cep3 | e6gsaB1 | A: alpha superhelices | X: Repetitive alpha hairpins | H: ARM repeat (From Topology) | T: ARM repeat | F: Cep3 | ECOD (1.6) |
A | Cep3 | e6gsaA1 | A: alpha superhelices | X: Repetitive alpha hairpins | H: ARM repeat (From Topology) | T: ARM repeat | F: Cep3 | ECOD (1.6) |
C | Skp1_POZ | e6gsaC1 | A: a+b two layers | X: POZ domain (From Topology) | H: POZ domain (From Topology) | T: POZ domain | F: Skp1_POZ | ECOD (1.6) |
E | NDC10_II_C | e6gsaE1 | A: alpha arrays | X: HTH | H: HTH | T: DNA breaking-rejoining enzymes | F: NDC10_II_C | ECOD (1.6) |
E | NDC10_II_N | e6gsaE2 | A: alpha arrays | X: HTH | H: HTH | T: DNA breaking-rejoining enzymes | F: NDC10_II_N | ECOD (1.6) |
E | Ndc10 | e6gsaE3 | A: alpha arrays | X: lambda integrase-N-like | H: lambda integrase-N (From Topology) | T: lambda integrase-N | F: Ndc10 | ECOD (1.6) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF16846 | Centromere DNA-binding protein complex CBF3 subunit B (Cep3) | Centromere DNA-binding protein complex CBF3 subunit B | - | Family | |
PF01466 | Skp1 family, dimerisation domain (Skp1) | Skp1 family, dimerisation domain | - | Domain | |
PF03931 | Skp1 family, tetramerisation domain (Skp1_POZ) | Skp1 family, tetramerisation domain | - | Domain | |
PF16787 | Centromere DNA-binding protein complex CBF3 subunit, domain 2 (NDC10_II) | Centromere DNA-binding protein complex CBF3 subunit, domain 2 | NDC10_II is a the second of five domains on the Kluyveromyces lactis Ndc10 protein. Each subunit of the Ndc10 dimer binds a separate fragment of DNA, suggesting that Ndc10 stabilises a DNA loop at the centromere [1]. | Domain |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
IPR036864 | Zn(2)-C6 fungal-type DNA-binding domain superfamily | Homologous Superfamily | |
IPR031760 | Centromere DNA-binding protein complex CBF3 subunit B, C-terminal | Domain | |
IPR050613 | Secondary Metabolite Biosynthesis Regulators | Family | |
IPR001138 | Zn(2)Cys(6) fungal-type DNA-binding domain | Domain | |
IPR016073 | SKP1 component, POZ domain | Domain | |
IPR001232 | S-phase kinase-associated protein 1-like | Family | |
IPR036296 | SKP1-like, dimerisation domain superfamily | Homologous Superfamily | |
IPR016072 | SKP1 component, dimerisation | Domain | |
IPR011333 | SKP1/BTB/POZ domain superfamily | Homologous Superfamily | |
IPR016897 | S-phase kinase-associated protein 1 | Family | |
IPR032675 | Leucine-rich repeat domain superfamily | Homologous Superfamily | |
IPR022210 | Transcription activator GCR1-like domain | Domain | |
IPR049055 | NDC10, N-terminal domain | Domain | |
IPR010998 | Integrase/recombinase, N-terminal | Homologous Superfamily | |
IPR038279 | Ndc10, domain 2 superfamily | Homologous Superfamily | |
IPR031872 | Ndc10, domain 2 | Domain |