6FLB
3H5 Fab bound to EDIII of DenV 2 Xtal form 2
External Resource: Annotation
Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage
Chains | Domain Info | Class | Fold | Superfamily | Family | Domain | Species | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A [auth G] | d6flbg_ | All beta proteins | Immunoglobulin-like beta-sandwich | E set domains | automated matches | automated matches | DENV-2 (dengue virus type 2 ) [TaxId: 11060 ], | SCOPe (2.08) |
B [auth H] | d6flbh1 | All beta proteins | Immunoglobulin-like beta-sandwich | Immunoglobulin | V set domains (antibody variable domain-like) | automated matches | (Mus musculus ) [TaxId: 10090 ], | SCOPe (2.08) |
B [auth H] | d6flbh2 | Artifacts | Tags | Tags | Tags | N-terminal Tags | (Mus musculus ) [TaxId: 10090 ], | SCOPe (2.08) |
C [auth L] | d6flbl2 | All beta proteins | Immunoglobulin-like beta-sandwich | Immunoglobulin | C1 set domains (antibody constant domain-like) | automated matches | (Mus musculus ) [TaxId: 10090 ], | SCOPe (2.08) |
C [auth L] | d6flbl1 | All beta proteins | Immunoglobulin-like beta-sandwich | Immunoglobulin | automated matches | automated matches | (Mus musculus ) [TaxId: 10090 ], | SCOPe (2.08) |
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
A [auth G] | SCOP2B Superfamily | E set domains | 8073044 | 3000070 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A [auth G] | Flavi_glycop_C | e6flbG1 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: Flavi_glycop_C | ECOD (1.6) |
B [auth H] | V-set_8 | e6flbH2 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: V-set_8 | ECOD (1.6) |
B [auth H] | C1-set_1 | e6flbH1 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: C1-set_1 | ECOD (1.6) |
C [auth L] | C1-set_4 | e6flbL2 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: C1-set_4 | ECOD (1.6) |
C [auth L] | V-set | e6flbL1 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: V-set | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
---|---|---|---|---|---|---|
A [auth G] | 2.60.40.350 | Mainly Beta | Sandwich | Immunoglobulin-like | CATH (4.3.0) | |
B [auth H] | 2.60.40.10 | Mainly Beta | Sandwich | Immunoglobulin-like | Immunoglobulins | CATH (utative) |
C [auth L] | 2.60.40.10 | Mainly Beta | Sandwich | Immunoglobulin-like | Immunoglobulins | CATH (4.3.0) |
IMGT Antibody Annotation IMGT Database Homepage
Chain | Protein Name | Description | Organism Name | Gene Allele Name(s) | Domain Name(s) | Receptor Type | Receptor Description | Provenance Source |
---|---|---|---|---|---|---|---|---|
B [auth H] | Fab 3H5 | VH-CH1 | Mus musculus (house mouse) | IGHV1-87*01, IGHJ4*01, IGHG1*02 | V-DOMAIN VH, C-DOMAIN CH1 | IG | FAB-GAMMA-1_KAPPA | IMGT (202440-0) |
C [auth L] | Fab 3H5 | L-KAPPA | Mus musculus (house mouse) | IGKV3-10*01, IGKJ4*01, IGKC*01, IGKC*02 | V-DOMAIN V-KAPPA, C-DOMAIN C-KAPPA | IG | FAB-GAMMA-1_KAPPA | IMGT (202440-0) |
SAbDab Antibody Annotation SAbDab Database Homepage
Chain | Chain Class | Chain Subclass | Chain Type | Antigen Name(s) | Provenance Source |
---|---|---|---|---|---|
B [auth H] | Heavy Chain | IGHV1 | - | domain iii of dengue virus 2 | SAbDab (2024-10-11) |
C [auth L] | Light Chain | IGKV3 | Kappa | domain iii of dengue virus 2 | SAbDab (2024-10-11) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
A [auth G] | PF02832 | Flavivirus glycoprotein, immunoglobulin-like domain (Flavi_glycop_C) | Flavivirus glycoprotein, immunoglobulin-like domain | - | Domain |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
A [auth G] | IPR038345 | Flavivirus envelope glycoprotein E, Stem/Anchor domain superfamily | Homologous Superfamily |
A [auth G] | IPR026470 | Flavivirus envelope glycoprotein E, Stem/Anchor domain | Domain |
A [auth G] | IPR011998 | Envelope glycoprotein E, central and dimerisation domain, flavivirus | Domain |
A [auth G] | IPR013755 | Flaviviral glycoprotein E, central domain, subdomain 1 | Homologous Superfamily |
A [auth G] | IPR038055 | Flaviviral glycoprotein E, dimerisation domain | Homologous Superfamily |
A [auth G] | IPR014756 | Immunoglobulin E-set | Homologous Superfamily |
A [auth G] | IPR027287 | Glycoprotein E, immunoglobulin-like domain, flavivirus | Domain |
A [auth G] | IPR013756 | Flaviviral glycoprotein E, central domain, subdomain 2 | Homologous Superfamily |
A [auth G] | IPR000336 | Flavivirus/Alphavirus glycoprotein, immunoglobulin-like domain superfamily | Homologous Superfamily |
A [auth G] | IPR036253 | Flavivirus glycoprotein, central and dimerisation domain superfamily | Homologous Superfamily |