6F58
Crystal structure of human Brachyury (T) in complex with DNA
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
C [auth A] | SCOP2B Superfamily | p53-like transcription factors | 8062625 | 3000758 | SCOP2B (2022-06-29) |
D [auth B] | SCOP2 Family | T-box | 8062624 | 4001850 | SCOP2 (2022-06-29) |
D [auth B] | SCOP2 Superfamily | p53-like transcription factors | 8062625 | 3000758 | SCOP2 (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
C [auth A] | T-box | e6f58A1 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Common fold of diphtheria toxin/transcription factors/cytochrome f | F: T-box | ECOD (1.6) |
D [auth B] | T-box | e6f58B1 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Common fold of diphtheria toxin/transcription factors/cytochrome f | F: T-box | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
---|---|---|---|---|---|---|
C [auth A] | 2.60.40.820 | Mainly Beta | Sandwich | Immunoglobulin-like | Transcription factor, T-box | CATH (4.3.0) |
D [auth B] | 2.60.40.820 | Mainly Beta | Sandwich | Immunoglobulin-like | Transcription factor, T-box | CATH (4.3.0) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
C [auth A], D [auth B] | PF00907 | T-box (T-box) | T-box | The T-box encodes a 180 amino acid domain that binds to DNA. Genes encoding T-box proteins are found in a wide range of animals, but not in other kingdoms such as plants. Family members are all thought to bind to the DNA consensus sequence TCACACCT. ... | Domain |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
C [auth A], D [auth B] | IPR001699 | T-box transcription factor | Family |
C [auth A], D [auth B] | IPR008967 | p53-like transcription factor, DNA-binding domain superfamily | Homologous Superfamily |
C [auth A], D [auth B] | IPR036960 | T-box superfamily | Homologous Superfamily |
C [auth A], D [auth B] | IPR046360 | T-box transcription factor, DNA-binding domain | Domain |
C [auth A], D [auth B] | IPR002070 | Transcription factor, Brachyury | Family |
C [auth A], D [auth B] | IPR018186 | Transcription factor, T-box, conserved site | Conserved Site |