6ERQ
Structure of the human mitochondrial transcription initiation complex at the HSP promoter
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A [auth C] | HMG_box | e6erqC1 | A: alpha arrays | X: HMG-box (From Topology) | H: HMG-box (From Topology) | T: HMG-box | F: HMG_box | ECOD (1.6) |
D [auth G] | HMG_box | e6erqG2 | A: alpha arrays | X: HMG-box (From Topology) | H: HMG-box (From Topology) | T: HMG-box | F: HMG_box | ECOD (1.6) |
I [auth F] | UNK_F_TYPE | e6erqF1 | A: alpha arrays | X: HhH/H2TH | H: H2TH (From Topology) | T: H2TH | F: UNK_F_TYPE | ECOD (1.6) |
I [auth F] | RrnaAD_N | e6erqF2 | A: a/b three-layered sandwiches | X: Rossmann-like | H: Rossmann-related | T: S-adenosyl-L-methionine-dependent methyltransferases | F: RrnaAD_N | ECOD (1.6) |
J | UNK_F_TYPE | e6erqJ2 | A: alpha arrays | X: HhH/H2TH | H: H2TH (From Topology) | T: H2TH | F: UNK_F_TYPE | ECOD (1.6) |
J | RrnaAD_N | e6erqJ1 | A: a/b three-layered sandwiches | X: Rossmann-like | H: Rossmann-related | T: S-adenosyl-L-methionine-dependent methyltransferases | F: RrnaAD_N | ECOD (1.6) |
G [auth A] | RPOL_N | e6erqA6 | A: alpha arrays | X: HTH | H: HTH | T: HTH in T7 RNA polymerase | F: RPOL_N | ECOD (1.6) |
G [auth A] | RNA_pol_2nd | e6erqA4 | A: alpha arrays | X: helical bundle in Bacillus stearothermophilus-like DNA polymerase I (From Topology) | H: helical bundle in Bacillus stearothermophilus-like DNA polymerase I (From Topology) | T: helical bundle in Bacillus stearothermophilus-like DNA polymerase I | F: RNA_pol_2nd | ECOD (1.6) |
G [auth A] | RNA_pol_1st | e6erqA1 | A: alpha arrays | X: inserted helical bundle subdomain in T7 RNA polymerase (From Topology) | H: inserted helical bundle subdomain in T7 RNA polymerase (From Topology) | T: inserted helical bundle subdomain in T7 RNA polymerase | F: RNA_pol_1st | ECOD (1.6) |
G [auth A] | KOG1038,RPOL_N | e6erqA7 | A: alpha bundles | X: fingers domain in bacteriophage RB69-like DNA polymerase I (From Topology) | H: fingers domain in bacteriophage RB69-like DNA polymerase I (From Topology) | T: fingers domain in bacteriophage RB69-like DNA polymerase I | F: KOG1038,RPOL_N | ECOD (1.6) |
G [auth A] | PPR_long | e6erqA3 | A: alpha superhelices | X: Repetitive alpha hairpins | H: ARM repeat (From Topology) | T: ARM repeat | F: PPR_long | ECOD (1.6) |
G [auth A] | RNA_pol_3rd | e6erqA5 | A: a+b two layers | X: Alpha-beta plaits | H: Adenylyl and guanylyl cyclase catalytic domain-like | T: Adenylyl and guanylyl cyclase catalytic domain-like | F: RNA_pol_3rd | ECOD (1.6) |
H [auth B] | RPOL_N | e6erqB6 | A: alpha arrays | X: HTH | H: HTH | T: HTH in T7 RNA polymerase | F: RPOL_N | ECOD (1.6) |
H [auth B] | RNA_pol_2nd | e6erqB5 | A: alpha arrays | X: helical bundle in Bacillus stearothermophilus-like DNA polymerase I (From Topology) | H: helical bundle in Bacillus stearothermophilus-like DNA polymerase I (From Topology) | T: helical bundle in Bacillus stearothermophilus-like DNA polymerase I | F: RNA_pol_2nd | ECOD (1.6) |
H [auth B] | RNA_pol_1st | e6erqB1 | A: alpha arrays | X: inserted helical bundle subdomain in T7 RNA polymerase (From Topology) | H: inserted helical bundle subdomain in T7 RNA polymerase (From Topology) | T: inserted helical bundle subdomain in T7 RNA polymerase | F: RNA_pol_1st | ECOD (1.6) |
H [auth B] | KOG1038,RPOL_N | e6erqB7 | A: alpha bundles | X: fingers domain in bacteriophage RB69-like DNA polymerase I (From Topology) | H: fingers domain in bacteriophage RB69-like DNA polymerase I (From Topology) | T: fingers domain in bacteriophage RB69-like DNA polymerase I | F: KOG1038,RPOL_N | ECOD (1.6) |
H [auth B] | PPR_long | e6erqB3 | A: alpha superhelices | X: Repetitive alpha hairpins | H: ARM repeat (From Topology) | T: ARM repeat | F: PPR_long | ECOD (1.6) |
H [auth B] | RNA_pol_3rd | e6erqB4 | A: a+b two layers | X: Alpha-beta plaits | H: Adenylyl and guanylyl cyclase catalytic domain-like | T: Adenylyl and guanylyl cyclase catalytic domain-like | F: RNA_pol_3rd | ECOD (1.6) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
A [auth C], D [auth G] | PF00505 | HMG (high mobility group) box (HMG_box) | HMG (high mobility group) box | - | Domain |
A [auth C], D [auth G] | PF09011 | HMG-box domain (HMG_box_2) | HMG-box domain | This short 71 residue domain is an HMG-box domain. HMG-box domains mediate re-modelling of chromatin-structure. Mammalian HMG-box proteins are of two types: those that are non-sequence-specific DNA-binding proteins with two HMG-box domains and a long ... | Domain |
G [auth A], H [auth B] | PF14700 | DNA-directed RNA polymerase N-terminal (RPOL_N) | DNA-directed RNA polymerase N-terminal | This is the N-terminal domain of DNA-directed RNA polymerase. This domain has a role in interaction with regions of upstream promoter DNA and the nascent RNA chain, leading to the processivity of the enzyme [1]. In order to make mRNA transcripts the ... | Domain |
G [auth A], H [auth B] | PF00940 | DNA-dependent RNA polymerase (RNA_pol) | DNA-dependent RNA polymerase | - | Family |