6EMW
Structure of S.aureus ClpC in complex with MecA
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
CA [auth c] | SCOP2B Superfamily | RecA-like P-loop NTPases | 8082859 | 3002019 | SCOP2B (2022-06-29) |
E | SCOP2 Family | Extended AAA-ATPase domain | 8082858 | 4000283 | SCOP2 (2022-06-29) |
E | SCOP2 Superfamily | RecA-like P-loop NTPases | 8082859 | 3002019 | SCOP2 (2022-06-29) |
K | SCOP2B Superfamily | RecA-like P-loop NTPases | 8082859 | 3002019 | SCOP2B (2022-06-29) |
OA [auth o] | SCOP2B Superfamily | RecA-like P-loop NTPases | 8082859 | 3002019 | SCOP2B (2022-06-29) |
Q | SCOP2B Superfamily | RecA-like P-loop NTPases | 8082859 | 3002019 | SCOP2B (2022-06-29) |
W | SCOP2B Superfamily | RecA-like P-loop NTPases | 8082859 | 3002019 | SCOP2B (2022-06-29) |
EA [auth e] | SCOP2B Superfamily | Adapter protein MecA, substrate binding domain-like | 8092887 | 3002638 | SCOP2B (2022-06-29) |
FA [auth f] | SCOP2 Family | Adapter protein MecA, substrate domain-like | 8092886 | 4007784 | SCOP2 (2022-06-29) |
FA [auth f] | SCOP2 Superfamily | Adapter protein MecA, substrate binding domain-like | 8092887 | 3002638 | SCOP2 (2022-06-29) |
GA [auth g] | SCOP2B Superfamily | Adapter protein MecA, substrate binding domain-like | 8092887 | 3002638 | SCOP2B (2022-06-29) |
HA [auth h] | SCOP2B Superfamily | Adapter protein MecA, substrate binding domain-like | 8092887 | 3002638 | SCOP2B (2022-06-29) |
IA [auth i] | SCOP2B Superfamily | Adapter protein MecA, substrate binding domain-like | 8092887 | 3002638 | SCOP2B (2022-06-29) |
JA [auth j] | SCOP2B Superfamily | Adapter protein MecA, substrate binding domain-like | 8092887 | 3002638 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | ClpB_D2-small | e6emwA1 | A: alpha arrays | X: Histone-like | H: Histone-related | T: AAA+ ATPase lid domain | F: ClpB_D2-small | ECOD (1.6) |
G | ClpB_D2-small | e6emwG1 | A: alpha arrays | X: Histone-like | H: Histone-related | T: AAA+ ATPase lid domain | F: ClpB_D2-small | ECOD (1.6) |
KA [auth k] | ClpB_D2-small | e6emwk1 | A: alpha arrays | X: Histone-like | H: Histone-related | T: AAA+ ATPase lid domain | F: ClpB_D2-small | ECOD (1.6) |
M | ClpB_D2-small | e6emwM1 | A: alpha arrays | X: Histone-like | H: Histone-related | T: AAA+ ATPase lid domain | F: ClpB_D2-small | ECOD (1.6) |
S | ClpB_D2-small | e6emwS1 | A: alpha arrays | X: Histone-like | H: Histone-related | T: AAA+ ATPase lid domain | F: ClpB_D2-small | ECOD (1.6) |
Y | ClpB_D2-small | e6emwY1 | A: alpha arrays | X: Histone-like | H: Histone-related | T: AAA+ ATPase lid domain | F: ClpB_D2-small | ECOD (1.6) |
B | Sigma54_activat | e6emwB1 | A: a/b three-layered sandwiches | X: P-loop domains-like | H: P-loop domains-related | T: P-loop containing nucleoside triphosphate hydrolases | F: Sigma54_activat | ECOD (1.6) |
H | Sigma54_activat | e6emwH1 | A: a/b three-layered sandwiches | X: P-loop domains-like | H: P-loop domains-related | T: P-loop containing nucleoside triphosphate hydrolases | F: Sigma54_activat | ECOD (1.6) |
LA [auth l] | Sigma54_activat | e6emwl1 | A: a/b three-layered sandwiches | X: P-loop domains-like | H: P-loop domains-related | T: P-loop containing nucleoside triphosphate hydrolases | F: Sigma54_activat | ECOD (1.6) |
N | Sigma54_activat | e6emwN1 | A: a/b three-layered sandwiches | X: P-loop domains-like | H: P-loop domains-related | T: P-loop containing nucleoside triphosphate hydrolases | F: Sigma54_activat | ECOD (1.6) |
T | Sigma54_activat | e6emwT1 | A: a/b three-layered sandwiches | X: P-loop domains-like | H: P-loop domains-related | T: P-loop containing nucleoside triphosphate hydrolases | F: Sigma54_activat | ECOD (1.6) |
Z | Sigma54_activat | e6emwZ1 | A: a/b three-layered sandwiches | X: P-loop domains-like | H: P-loop domains-related | T: P-loop containing nucleoside triphosphate hydrolases | F: Sigma54_activat | ECOD (1.6) |
AA [auth a] | chaperone_ClpB | e6emwa1 | A: alpha bundles | X: Long alpha-hairpin | H: C-terminal UvrC-binding domain of UvrB (From Topology) | T: C-terminal UvrC-binding domain of UvrB | F: chaperone_ClpB | ECOD (1.6) |
C | chaperone_ClpB | e6emwC1 | A: alpha bundles | X: Long alpha-hairpin | H: C-terminal UvrC-binding domain of UvrB (From Topology) | T: C-terminal UvrC-binding domain of UvrB | F: chaperone_ClpB | ECOD (1.6) |
I | chaperone_ClpB | e6emwI1 | A: alpha bundles | X: Long alpha-hairpin | H: C-terminal UvrC-binding domain of UvrB (From Topology) | T: C-terminal UvrC-binding domain of UvrB | F: chaperone_ClpB | ECOD (1.6) |
MA [auth m] | chaperone_ClpB | e6emwm1 | A: alpha bundles | X: Long alpha-hairpin | H: C-terminal UvrC-binding domain of UvrB (From Topology) | T: C-terminal UvrC-binding domain of UvrB | F: chaperone_ClpB | ECOD (1.6) |
O | chaperone_ClpB | e6emwO1 | A: alpha bundles | X: Long alpha-hairpin | H: C-terminal UvrC-binding domain of UvrB (From Topology) | T: C-terminal UvrC-binding domain of UvrB | F: chaperone_ClpB | ECOD (1.6) |
U | chaperone_ClpB | e6emwU1 | A: alpha bundles | X: Long alpha-hairpin | H: C-terminal UvrC-binding domain of UvrB (From Topology) | T: C-terminal UvrC-binding domain of UvrB | F: chaperone_ClpB | ECOD (1.6) |
BA [auth b] | chaperone_ClpB | e6emwb1 | A: alpha arrays | X: Histone-like | H: Histone-related | T: AAA+ ATPase lid domain | F: chaperone_ClpB | ECOD (1.6) |
D | chaperone_ClpB | e6emwD1 | A: alpha arrays | X: Histone-like | H: Histone-related | T: AAA+ ATPase lid domain | F: chaperone_ClpB | ECOD (1.6) |
J | chaperone_ClpB | e6emwJ1 | A: alpha arrays | X: Histone-like | H: Histone-related | T: AAA+ ATPase lid domain | F: chaperone_ClpB | ECOD (1.6) |
NA [auth n] | chaperone_ClpB | e6emwn1 | A: alpha arrays | X: Histone-like | H: Histone-related | T: AAA+ ATPase lid domain | F: chaperone_ClpB | ECOD (1.6) |
P | chaperone_ClpB | e6emwP1 | A: alpha arrays | X: Histone-like | H: Histone-related | T: AAA+ ATPase lid domain | F: chaperone_ClpB | ECOD (1.6) |
V | chaperone_ClpB | e6emwV1 | A: alpha arrays | X: Histone-like | H: Histone-related | T: AAA+ ATPase lid domain | F: chaperone_ClpB | ECOD (1.6) |
CA [auth c] | Sigma54_activat | e6emwc1 | A: a/b three-layered sandwiches | X: P-loop domains-like | H: P-loop domains-related | T: P-loop containing nucleoside triphosphate hydrolases | F: Sigma54_activat | ECOD (1.6) |
E | Sigma54_activat | e6emwE1 | A: a/b three-layered sandwiches | X: P-loop domains-like | H: P-loop domains-related | T: P-loop containing nucleoside triphosphate hydrolases | F: Sigma54_activat | ECOD (1.6) |
K | Sigma54_activat | e6emwK1 | A: a/b three-layered sandwiches | X: P-loop domains-like | H: P-loop domains-related | T: P-loop containing nucleoside triphosphate hydrolases | F: Sigma54_activat | ECOD (1.6) |
OA [auth o] | Sigma54_activat | e6emwo1 | A: a/b three-layered sandwiches | X: P-loop domains-like | H: P-loop domains-related | T: P-loop containing nucleoside triphosphate hydrolases | F: Sigma54_activat | ECOD (1.6) |
Q | Sigma54_activat | e6emwQ1 | A: a/b three-layered sandwiches | X: P-loop domains-like | H: P-loop domains-related | T: P-loop containing nucleoside triphosphate hydrolases | F: Sigma54_activat | ECOD (1.6) |
W | Sigma54_activat | e6emwW1 | A: a/b three-layered sandwiches | X: P-loop domains-like | H: P-loop domains-related | T: P-loop containing nucleoside triphosphate hydrolases | F: Sigma54_activat | ECOD (1.6) |
DA [auth d] | Clp_N | e6emwd1 | A: alpha arrays | X: Histone-like | H: Histone-related | T: double Clp-N | F: Clp_N | ECOD (1.6) |
F | Clp_N | e6emwF1 | A: alpha arrays | X: Histone-like | H: Histone-related | T: double Clp-N | F: Clp_N | ECOD (1.6) |
L | Clp_N | e6emwL1 | A: alpha arrays | X: Histone-like | H: Histone-related | T: double Clp-N | F: Clp_N | ECOD (1.6) |
PA [auth p] | Clp_N | e6emwp1 | A: alpha arrays | X: Histone-like | H: Histone-related | T: double Clp-N | F: Clp_N | ECOD (1.6) |
R | Clp_N | e6emwR1 | A: alpha arrays | X: Histone-like | H: Histone-related | T: double Clp-N | F: Clp_N | ECOD (1.6) |
X | Clp_N | e6emwX1 | A: alpha arrays | X: Histone-like | H: Histone-related | T: double Clp-N | F: Clp_N | ECOD (1.6) |
EA [auth e] | MecA_sub_bind | e6emwe1 | A: a+b two layers | X: Glucose permease domain IIB-like | H: MecA substrate binding domain (From Topology) | T: MecA substrate binding domain | F: MecA_sub_bind | ECOD (1.6) |
FA [auth f] | MecA_sub_bind | e6emwf1 | A: a+b two layers | X: Glucose permease domain IIB-like | H: MecA substrate binding domain (From Topology) | T: MecA substrate binding domain | F: MecA_sub_bind | ECOD (1.6) |
GA [auth g] | MecA_sub_bind | e6emwg1 | A: a+b two layers | X: Glucose permease domain IIB-like | H: MecA substrate binding domain (From Topology) | T: MecA substrate binding domain | F: MecA_sub_bind | ECOD (1.6) |
HA [auth h] | MecA_sub_bind | e6emwh1 | A: a+b two layers | X: Glucose permease domain IIB-like | H: MecA substrate binding domain (From Topology) | T: MecA substrate binding domain | F: MecA_sub_bind | ECOD (1.6) |
IA [auth i] | MecA_sub_bind | e6emwi1 | A: a+b two layers | X: Glucose permease domain IIB-like | H: MecA substrate binding domain (From Topology) | T: MecA substrate binding domain | F: MecA_sub_bind | ECOD (1.6) |
JA [auth j] | MecA_sub_bind | e6emwj1 | A: a+b two layers | X: Glucose permease domain IIB-like | H: MecA substrate binding domain (From Topology) | T: MecA substrate binding domain | F: MecA_sub_bind | ECOD (1.6) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF10431 | C-terminal, D2-small domain, of ClpB protein (ClpB_D2-small) | C-terminal, D2-small domain, of ClpB protein | This is the C-terminal domain of ClpB protein, referred to as the D2-small domain, and is a mixed alpha-beta structure. Compared with the D1-small domain (included in AAA, Pfam:PF00004) it lacks the long coiled-coil insertion, and instead of helix C4 ... | Domain | |
PF07724 | AAA domain (Cdc48 subfamily) (AAA_2) | AAA domain (Cdc48 subfamily) | This Pfam entry includes some of the AAA proteins not detected by the Pfam:PF00004 model. | Domain | |
PF17871 | AAA lid domain (AAA_lid_9) | AAA lid domain | This entry represents the alpha helical AAA+ lid domain that is found to the C-terminus of AAA domains. | Domain | |
PF17871 | AAA lid domain (AAA_lid_9) | AAA lid domain | This entry represents the alpha helical AAA+ lid domain that is found to the C-terminus of AAA domains. | Domain | |
PF00004 | ATPase family associated with various cellular activities (AAA) (AAA) | ATPase family associated with various cellular activities (AAA) | AAA family proteins often perform chaperone-like functions that assist in the assembly, operation, or disassembly of protein complexes [2]. | Domain | |
PF02861 | Clp amino terminal domain, pathogenicity island component (Clp_N) | Clp amino terminal domain, pathogenicity island component | - | Family | |