6EFN
Structure of a RiPP maturase, SkfB
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | F_UNCLASSIFIED | e6efnA2 | A: alpha arrays | X: HTH | H: HTH | T: winged | F: F_UNCLASSIFIED | ECOD (1.6) |
A | PF04055 | e6efnA1 | A: a/b barrels | X: TIM beta/alpha-barrel | H: TIM barrels (From Topology) | T: TIM barrels | F: PF04055 | ECOD (1.6) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF04055 | Radical SAM superfamily (Radical_SAM) | Radical SAM superfamily | Radical SAM proteins catalyse diverse reactions, including unusual methylations, isomerisation, sulphur insertion, ring formation, anaerobic oxidation and protein radical formation. | Domain | |
PF13186 | Iron-sulfur cluster-binding domain (SPASM) | Iron-sulfur cluster-binding domain | This domain occurs as an additional C-terminal iron-sulfur cluster binding domain in many radical SAM domain, Pfam:PF04055 proteins. The domain occurs in a number of proteins that modify a protein to become an active enzyme, or a peptide to become a ... | Domain |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
IPR007197 | Radical SAM | Domain | |
IPR023885 | 4Fe4S-binding SPASM domain | Domain | |
IPR006638 | Elp3/MiaA/NifB-like, radical SAM core domain | Domain | |
IPR000385 | MoaA/NifB/PqqE, iron-sulphur binding, conserved site | Conserved Site | |
IPR013785 | Aldolase-type TIM barrel | Homologous Superfamily | |
IPR030915 | Sporulation killing factor system, radical SAM maturase SkfB | Family |