Annotations: 6EEW

Crystal structure of Catharanthus roseus tryptophan decarboxylase in complex with L-tryptophan

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification
Protein Modification Annotation

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
D	d6eewd_	Alpha and beta proteins (a/b)	PLP-dependent transferase-like	PLP-dependent transferases	automated matches	automated matches	Madagascar periwinkle (Catharanthus roseus ) [TaxId: 4058 ],	SCOPe (2.08)
C	d6eewc_	Alpha and beta proteins (a/b)	PLP-dependent transferase-like	PLP-dependent transferases	automated matches	automated matches	Madagascar periwinkle (Catharanthus roseus ) [TaxId: 4058 ],	SCOPe (2.08)
B	d6eewb_	Alpha and beta proteins (a/b)	PLP-dependent transferase-like	PLP-dependent transferases	automated matches	automated matches	Madagascar periwinkle (Catharanthus roseus ) [TaxId: 4058 ],	SCOPe (2.08)
A	d6eewa_	Alpha and beta proteins (a/b)	PLP-dependent transferase-like	PLP-dependent transferases	automated matches	automated matches	Madagascar periwinkle (Catharanthus roseus ) [TaxId: 4058 ],	SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
D	SCOP2B Superfamily	PLP-dependent transferases	8083286	3000954	SCOP2B (2022-06-29)
C	SCOP2B Superfamily	PLP-dependent transferases	8083286	3000954	SCOP2B (2022-06-29)
B	SCOP2B Superfamily	PLP-dependent transferases	8083286	3000954	SCOP2B (2022-06-29)
A	SCOP2 Family	Pyridoxal-dependent decarboxylase	8083285	4003328	SCOP2 (2022-06-29)
A	SCOP2 Superfamily	PLP-dependent transferases	8083286	3000954	SCOP2 (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
D	OB_NTP_bind	e6eewD1	A: alpha arrays	X: L-aspartase middle domain-like	H: gp11/gp12 receptor-binding domain	T: gp11/gp12 receptor-binding domain	F: OB_NTP_bind	ECOD (v295.2)
C	OB_NTP_bind	e6eewC1	A: alpha arrays	X: L-aspartase middle domain-like	H: gp11/gp12 receptor-binding domain	T: gp11/gp12 receptor-binding domain	F: OB_NTP_bind	ECOD (v295.2)
B	OB_NTP_bind	e6eewB1	A: alpha arrays	X: L-aspartase middle domain-like	H: gp11/gp12 receptor-binding domain	T: gp11/gp12 receptor-binding domain	F: OB_NTP_bind	ECOD (v295.2)
A	Flu_PB2_1st	e6eewA1	A: alpha arrays	X: fingers domain in bacteriophage RB69-like DNA polymerase I	H: fingers domain in bacteriophage RB69-like DNA polymerase I	T: fingers domain in bacteriophage RB69-like DNA polymerase I	F: Flu_PB2_1st	ECOD (v295.2)

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B, C, D	Aromatic-L-amino-acid decarboxylase	aromatic-L-amino-acid decarboxylase activity 5-hydroxy-L-tryptophan decarboxylase activity carboxy-lyase activity lyase activity catalytic activity carbon-carbon lyase activity vitamin binding vitamin B6 binding pyridoxal phosphate binding ion binding binding anion binding heterocyclic compound binding small molecule binding aromatic-L-amino-acid decarboxylase activity 5-hydroxy-L-tryptophan decarboxylase activity carboxy-lyase activity lyase activity catalytic activity carbon-carbon lyase activity vitamin binding vitamin B6 binding pyridoxal phosphate binding ion binding binding anion binding heterocyclic compound binding small molecule binding L-tryptophan decarboxylase activity	amino acid metabolic process primary metabolic process metabolic process cellular process	cellular anatomical structure intracellular anatomical structure cytoplasm

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B, C, D	IPR015424	Pyridoxal phosphate-dependent transferase	Homologous Superfamily
A, B, C, D	IPR015421	Pyridoxal phosphate-dependent transferase, major domain	Homologous Superfamily
A, B, C, D	IPR010977	Aromatic-L-amino-acid decarboxylase	Family
A, B, C, D	IPR002129	Pyridoxal phosphate-dependent decarboxylase, major domain	Domain
A, B, C, D	IPR015422	Pyridoxal phosphate-dependent transferase, small domain	Homologous Superfamily
A, B, C, D	IPR021115	Pyridoxal-phosphate binding site	Binding Site

Protein Modification Annotation

Modified Residue(s)
Chain	Residue(s)	Description
A, B, C, D	LLP	Parent Component: LYS : AA0119 : N6-pyridoxal phosphate-L-lysine MOD:00128