6DZM
Bundibugyo virus GP (mucin-deleted) in complex with pan-ebolavirus human antibody ADI-15878 Fab
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | Filo_glycop | e6dzmA1 | A: a+b complex topology | X: Envelope glycoprotein GP1 (From Topology) | H: Envelope glycoprotein GP1 (From Topology) | T: Envelope glycoprotein GP1 | F: Filo_glycop | ECOD (1.6) |
E [auth B] | Filo_glycop | e6dzmB1 | A: a+b complex topology | X: Envelope glycoprotein GP1 (From Topology) | H: Envelope glycoprotein GP1 (From Topology) | T: Envelope glycoprotein GP1 | F: Filo_glycop | ECOD (1.6) |
I [auth C] | Filo_glycop | e6dzmC1 | A: a+b complex topology | X: Envelope glycoprotein GP1 (From Topology) | H: Envelope glycoprotein GP1 (From Topology) | T: Envelope glycoprotein GP1 | F: Filo_glycop | ECOD (1.6) |
B [auth D] | Ebola-like_HR1-HR2 | e6dzmD1 | A: a+b duplicates or obligate multimers | X: Envelope glycoprotein GP2-related (From Topology) | H: Envelope glycoprotein GP2-related (From Topology) | T: Envelope glycoprotein GP2-related | F: Ebola-like_HR1-HR2 | ECOD (1.6) |
F [auth E] | Ebola-like_HR1-HR2 | e6dzmE1 | A: a+b duplicates or obligate multimers | X: Envelope glycoprotein GP2-related (From Topology) | H: Envelope glycoprotein GP2-related (From Topology) | T: Envelope glycoprotein GP2-related | F: Ebola-like_HR1-HR2 | ECOD (1.6) |
J [auth F] | Ebola-like_HR1-HR2 | e6dzmF1 | A: a+b duplicates or obligate multimers | X: Envelope glycoprotein GP2-related (From Topology) | H: Envelope glycoprotein GP2-related (From Topology) | T: Envelope glycoprotein GP2-related | F: Ebola-like_HR1-HR2 | ECOD (1.6) |
C [auth H] | V-set | e6dzmH1 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: V-set | ECOD (1.6) |
G [auth K] | V-set | e6dzmK1 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: V-set | ECOD (1.6) |
K [auth L] | V-set | e6dzmL1 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: V-set | ECOD (1.6) |
D [auth G] | V-set_12 | e6dzmG1 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: V-set_12 | ECOD (1.6) |
H [auth I] | V-set_12 | e6dzmI1 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: V-set_12 | ECOD (1.6) |
L [auth J] | V-set_12 | e6dzmJ1 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: V-set_12 | ECOD (1.6) |
IMGT Antibody Annotation IMGT Database Homepage
Chain | Protein Name | Description | Organism Name | Gene Allele Name(s) | Domain Name(s) | Receptor Type | Receptor Description | Provenance Source |
---|---|---|---|---|---|---|---|---|
C [auth H], G [auth K], K [auth L] | Fab ADI-15878 | V-KAPPA | Homo sapiens (human) | IGKV1-5*01, IGKJ4*01, IGKJ4*02 | V-DOMAIN V-KAPPA | RPI | VH-V-KAPPA | IMGT (202433-0) |
D [auth G], H [auth I], L [auth J] | Fab ADI-15878 | VH | Homo sapiens (human) | IGHV3-23*04, IGHJ4*01, IGHJ4*02, IGHJ4*03 | V-DOMAIN VH | RPI | VH-V-KAPPA | IMGT (202433-0) |
SAbDab Antibody Annotation SAbDab Database Homepage
Chain | Chain Class | Chain Subclass | Chain Type | Antigen Name(s) | Provenance Source |
---|---|---|---|---|---|
C [auth H], G [auth K], K [auth L] | Light Chain | IGKV1 | Kappa | bundibugyo virus gp2 | bundibugyo virus gp1 | SAbDab (2024-08-23) |
D [auth G], H [auth I], L [auth J] | Heavy Chain | IGHV3 | - | bundibugyo virus gp2 | bundibugyo virus gp1 | SAbDab (2024-08-23) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
A, E [auth B], I [auth C] | PF01611 | Filovirus glycoprotein (Filo_glycop) | Filovirus glycoprotein | - | Family |
B [auth D], F [auth E], J [auth F] | PF22307 | Envelope glycoprotein GP2-like, HR1-HR2 (Ebola-like_HR1-HR2) | Envelope glycoprotein GP2-like, HR1-HR2 | This entry spans heptad repeats 1 and 2 of the glycoprotein (GP) from Ebola and Marburg viruses [1-5]. Viral infection involves the formation of a trimer-of-hairpins structure (three HR1s helices, buttressed by three HR2 helices lying in antiparallel ... | Domain |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
Chains | Polymer | Molecular Function | Biological Process | Cellular Component |
---|---|---|---|---|
A, E [auth B], I [auth C] | Bundibugyo virus GP1 | - | - | |
B [auth D], F [auth E], J [auth F] | Bundibugyo virus GP2 | - | - | |
C [auth H], G [auth K], K [auth L] | Antibody ADI-15878 Fab, light chain | - | - | - |
D [auth G], H [auth I], L [auth J] | Antibody ADI-15878 Fab, heavy chain | - | - | - |